These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGAAGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAGCGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGGCGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGGGCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGGAAGCGTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTACCAGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAGAACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGATCTGTTCACGCACACCTTCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCTGAAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGAGGAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGCCGAAATGGTGAAGGGTTCCGCGGC] [+] EMBL BM651675 [CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGAAGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAGCGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGGCGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGGGCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGGAAGCGTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTACCAGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAGAACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGATCTGTTCACGCACACCTTCCCAGTAC ] [+] EMBL BM575101 [ ccgCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAGCGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGGCTGCCTGCTCCGGAAAGGCGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGGGCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGGAAGCGTCCGGCTACCTGCACATCGGGCACGCGAAGGCGGCCCTGCTCAACCAGTACTACCAGCAGGCGTTCCAGGGCAAGCTGATCATGCGCTTCGACGATACCAACCCGGCGAAGGAGAACGTACACTTCGAGCAGGTGATACTGGAGGATCTGAAGATGCTGCAAATCAAGCCGGATCTGTTCACGCACACC TCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCTGAAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGAGGAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGCCGAAATGGTGAAGGGTTCCGCGGC] consensusID : consensus_4599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TCGCAGAGTTTGGAAGGAAAAACAAGATAAACCTTATTTGGTGAAGTTTCTCATTTGACGCCCTCACCCGAAGATGGTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGGACTCATCGCGGCGGAACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGAAACGTCCATATCGTACGCCACCCGGACGCTCGCCTGCATCACCAACAACGATGTGCTGCGGGCGCTGGCCAGGGTTGCGCCGGGGCTCCGGCTGTACGGCGAGACGCCAATCGAGCGCACGCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGACGAGCTGAAGTACCTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCA] [+] EMBL BM621349 [TCGCAGAGTTTGGAAGGAAAAACAAGATAAACCTTATTTGGTGAAGTTTCTCATTTGACGCCCTCACCCGAAGATGGTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGGACTCATCGCGGCGGAACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGAAACGTCCATATCGTACGCCACCCGGACGCTCGCCTGCATCACCAACAACGATGTGCTGCGGGCGCTGGCCAGGGTTGCGCCGGGGCTCCGGCTGTACGGCGAGACGCCAATCGAGCGCACGCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGACGAGCTGAAGTACCTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCTTACCATCGCCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCATCCCGCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4599#0 CCGCCCACGCGTCCGCGGACGCGTGGGTGTCGATGGAGAAGGATCCGTCGGACGAGCTGA 60 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 AGTACCTGAACAAATGTCTTGGCCCGTTGACGTATCTCGTGGCGAACCATCTTACCATCG 120 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 CCGATCTGGCCGTGTTCAACGAGCTGTACGTGCGGTACGAGCAGCTGAAGAAGATCGGCA 180 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TCCCGCAGCACGTGCAGCGCTGGTACAATCTCATGCTCGCGCAGCCCTGCACGAAGGAAG 240 consensus_4599#1 ------------------------------------TCGCAGAGTTT----GGAAGGAAA 20 **** ** ******* consensus_4599#0 CGCTGGGCAAGCATGCGGACGAGCTACGGTCGGCCGTTGCGACTGCCTGCTCCGGAAAGG 300 consensus_4599#1 AACAAGATAAAC---CTTATTTGGTGAAGTTTCTCATT-TGACGCCCTCACCCGAAGATG 76 * * ** * * * * * ** * ** *** *** *** * * * consensus_4599#0 CGAAGGAACCGAGCCCGGACAAGGGCGCAGCGGACGGTGGCAGTGGTAAGCGCGAGCAGG 360 consensus_4599#1 GTATCAACGTTCGTTTGTTCCAAATCGAACGCGGCGGTAGGTGGACTCATCGCG-GCGGA 135 * * * * * * ** * * **** * * * * **** ** * consensus_4599#0 GCAAATTCGTCGACCTGCCCGGGGCAGAGATGGGCAAGGTGGTGGTACGGTTTCCACCGG 420 consensus_4599#1 ACTGCTGCGCCCGGCGTACCCGATCGAAGTGCGCTGGGGCAACGAAACG-TCCATATCGT 194 * * ** * * ** * * ** * ** * *** * * ** consensus_4599#0 AAGC-GTCCGGCTACCTGCACATCGGGCACGCAAAGGCGGCCCTGCTCAACCAGTACTAC 479 consensus_4599#1 ACGCCACCCGGACGCTCGCCT-----GCAT-CACCAACAACGATGTGCTGCGGGCGCTGG 248 * ** **** * ** *** ** * * ** * * * ** consensus_4599#0 CAGCAGGCGTTCCAGGGCAAGCTGATCATGTGCTTCGACGATACCAACCCGGCGAAGGAG 539 consensus_4599#1 CCAGGGTTGCGCCGGGGC--TCCGGC--TGTACGGCGA-GACGCCAATC--------GAG 295 * * * ** **** * * *** * *** ** **** * *** consensus_4599#0 AACGTACACTTCGAGCAGGTGATACTGGAGGATCTGGAGATGCTGCAAATCAAGCCGGAT 599 consensus_4599#1 CGCACGCAGATCGACCACTGGCTGACGTACACGCTGTCGATGGAGAAGGACCCGTCCGAC 355 * ** **** ** * * * * *** **** * * * * * ** consensus_4599#0 CTGTTCACGCACACCTTCCCAGTACTTCGACCTGATGCTGGACTACTGCGTGCGGCTGCT 659 consensus_4599#1 GAGCTGAAGTAC-CTGAACAAATGTCTCGGCCCGCTGACGTATCTCGTGGCGAACCATCT 414 * * * * ** * * * * *** ** * ** * * * * * * ** consensus_4599#0 GAAGGAGGGCAAGGCGTACGTCGACGACACGGAACCGGAGCAGATGAAGAACGAGCGCGA 719 consensus_4599#1 TACCATCGCCGATCTGGCCGTGTTCAAC---GAGCTG---TACGTGCGGTACGAGCAGCT 468 * * * * * *** * ** ** * * * ** * ****** consensus_4599#0 GGAGCGGGTGGAGTCGAAAAATCGCAGCAACACGCCGGAACGCAATCTGGCGATGTGGGC 779 consensus_4599#1 GAAGAAGAT-----CGGCATCCCGCAGCA------------------------------- 492 * ** * * ** * ******* consensus_4599#0 CGAAATGGTGAAGGGTTCCGCGGC 803 consensus_4599#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||