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Anopheles gambiae
cluster # 4603 cluster # 4603       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4603#0 length = 995 sequences # 2  
consensus_4603#1 length = 604 sequences # 1  

consensusID : consensus_4603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 995
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGCTCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATAGACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGCACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCGGATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCGAACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGTCGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCGGCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCCGGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT]

[+] EMBL BM596067             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGCTCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATAGACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGCACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCGGATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCGAACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGTCGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTC                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM585612             [                                                                                                                                                                                                                                                                                                                                                                               ccgCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCGGCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCCGGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT]


>consensus_4603#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGC TCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATA GACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGC ACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCG GATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCG AACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGT CGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCG GTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCG TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACA CCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTA AACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCG GCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCC GGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGT CCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAAT GTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAA CAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGT GACCGGAAATCCCAACAGATTTCCGAATCCACCTT



consensusID : consensus_4603#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence
                              [ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC]

[+] EMBL AL932108             [ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC]


>consensus_4603#1 ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCC GGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCA AGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCG TGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCG CAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGC CGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGT CGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACA GAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCA ATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCAC TTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCG GCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4603#0      CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGC 60
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      TCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATA 120
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      GACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGC 180
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      ACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCG 240
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      GATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCG 300
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      AACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGT 360
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      CGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCG 420
consensus_4603#1      ------------------------------------------------------------
                                                                                  

consensus_4603#0      GTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCG 480
consensus_4603#1      --------------------------ATTGCCCGAGGTTAG--CCCGCAGC-ACTCGCCG 31
                                                   ** * ** *  *  ******** ********

consensus_4603#0      TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACA 540
consensus_4603#1      TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACA 91
                      ********************************************** *** *********

consensus_4603#0      CCATCCCTG-GGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCT 599
consensus_4603#1      CCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCT 151
                      ********* **************************************************

consensus_4603#0      AAACCGGATGATGCATCAGCACGGGCTCG-GTGGGCTTGGGAGTGATAAG-ACGGCGGCG 657
consensus_4603#1      AAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTG 211
                      ***************************** ********************  **** * *

consensus_4603#0      GCGGCGGTGGCTGAC-GGTGCCAGTACCCGCAAGCC-GAACGGTAAATCGCTCGTTGTCG 715
consensus_4603#1      -CGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCG 270
                       ************** ******************** ***********************

consensus_4603#0      TCCCCG-GCAGTGC-GCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGT 773
consensus_4603#1      TCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGT 330
                      ****** ******* *********************************************

consensus_4603#0      GGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGG 833
consensus_4603#1      GGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGG 390
                      ********* *********************** **************************

consensus_4603#0      TGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCG 893
consensus_4603#1      TGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCG 450
                      ************************************************************

consensus_4603#0      GCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCA 953
consensus_4603#1      GCGAGAACAGCAGCAGCAACAGCAGCAGCA---------ATCAAAGACGGAAACTACGCA 501
                      ****************** ***********         *********************

consensus_4603#0      TGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT------------------ 995
consensus_4603#1      TGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAA 561
                      ******************* ******************* *                   

consensus_4603#0      -------------------------------------------
consensus_4603#1      TCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC 604
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)