These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 995 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGCTCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATAGACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGCACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCGGATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCGAACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGTCGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCGGCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCCGGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT] [+] EMBL BM596067 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGCTCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATAGACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGCACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCGGATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCGAACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGTCGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTC ] [+] EMBL BM585612 [ ccgCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCGGTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACACCATCCCTGGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGGTGGGCTTGGGAGTGATAAGACGGCGGCGGCGGCGGTGGCTGACGGTGCCAGTACCCGCAAGCCGAACGGTAAATCGCTCGTTGTCGTCCCCGGCAGTGCGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT] consensusID : consensus_4603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC] [+] EMBL AL932108 [ATTGCCCGAGGTTAGCCCGCAGCACTCGCCGTTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACACCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCTAAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTGCGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCGTCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGTGGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGGTGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCGGCGAGAACAGCAGCAGCAACAGCAGCAGCAATCAAAGACGGAAACTACGCATGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAATCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4603#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGGTGGCCGTGAAGAAGGTTACCCTTCGC 60 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 TCGACCGATCACAGTCCCAGCCCGCGCAAAGAACGCACCAAGACCTGGTACCGCAGCATA 120 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 GACTTCAATGCGGCGTTGCAGAAACTGGAATCGCATCGACACTCGCTCGACACCAAAGGC 180 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 ACACCAAAGAAACAGTCGTCCGAACCGGAGACGCCCGCCACCAAGGAGCGGTCAAAGCCG 240 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 GATCGGACCACCACCGAAGAAGTCACCGCCACGACCAACGCCACCACTGCCGCCAAACCG 300 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 AACTTCTCCATCGGAGGGCGCGTGAGTTTGCGCGAGCGGGTAGAAAACATGAACCTAAGT 360 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 CGATTGCGCCCGTCAAAAGTGTCCTCCGGTGGCAGTCCCGTCCCATCCGCCATGACGCCG 420 consensus_4603#1 ------------------------------------------------------------ consensus_4603#0 GTGGCCGTTGTGAAAAAAGTGTCGGACACGCGCAAGATACGGCCCCGCAGCCACTCGCCG 480 consensus_4603#1 --------------------------ATTGCCCGAGGTTAG--CCCGCAGC-ACTCGCCG 31 ** * ** * * ******** ******** consensus_4603#0 TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGGCGCTGCCGCCACA 540 consensus_4603#1 TTGAAAAACATCAAGATAAACCTGTCGCCGGTAAAGAAGGCAACCGCCGCCGCCGCCACA 91 ********************************************** *** ********* consensus_4603#0 CCATCCCTG-GGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCT 599 consensus_4603#1 CCATCCCTGTGGGGCCGACAAAGCCTCCAAGCGGGAATCGATCGGTCTGTTTGGCCGGCT 151 ********* ************************************************** consensus_4603#0 AAACCGGATGATGCATCAGCACGGGCTCG-GTGGGCTTGGGAGTGATAAG-ACGGCGGCG 657 consensus_4603#1 AAACCGGATGATGCATCAGCACGGGCTCGTGTGGGCTTGGGAGTGATAAGTGCGGCTGTG 211 ***************************** ******************** **** * * consensus_4603#0 GCGGCGGTGGCTGAC-GGTGCCAGTACCCGCAAGCC-GAACGGTAAATCGCTCGTTGTCG 715 consensus_4603#1 -CGGCGGTGGCTGACTGGTGCCAGTACCCGCAAGCCTGAACGGTAAATCGCTCGTTGTCG 270 ************** ******************** *********************** consensus_4603#0 TCCCCG-GCAGTGC-GCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGT 773 consensus_4603#1 TCCCCGTGCAGTGCTGCCCAAAAATGGTGCCGAGGATGGGTCGGTGACTTCTGCTTCCGT 330 ****** ******* ********************************************* consensus_4603#0 GGCGCGTCCAACCGGAACCGATAAGGCAGTCGGGGCGGGCAGTGCTGGCGTCAGCTTCGG 833 consensus_4603#1 GGCGCGTCCGACCGGAACCGATAAGGCAGTCGGTGCGGGCAGTGCTGGCGTCAGCTTCGG 390 ********* *********************** ************************** consensus_4603#0 TGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCG 893 consensus_4603#1 TGGGAATGTTAGTAAACAGTCGACGATACAGAAGCTGACGCAGCTGAGCAGTTGCAACCG 450 ************************************************************ consensus_4603#0 GCGAGAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGCAATCAAAGACGGAAACTACGCA 953 consensus_4603#1 GCGAGAACAGCAGCAGCAACAGCAGCAGCA---------ATCAAAGACGGAAACTACGCA 501 ****************** *********** ********************* consensus_4603#0 TGAACGTGACCGGAAATCCCAACAGATTTCCGAATCCACCTT------------------ 995 consensus_4603#1 TGAACGTGACCGGAAATCCAAACAGATTTCCGAATCCACTTGGGTCACGGGCACTCGAAA 561 ******************* ******************* * consensus_4603#0 ------------------------------------------- consensus_4603#1 TCGAACGGTGGCATCACGTTCGCGGACGGAGCAAGCTCGGCTC 604 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||