These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 978 fasta sequence [TAAACAGTTTATTTACATCAAATAAAGACGTATCAAGACAATCGGTTCTCTCTCAGCTCTCAGCTTCCGTGGTTGAACTTACAGTCCATCTCTGCCAACGGGCAACCATCCGGATGGTTGACGAAAAACCAACAAACACGTTGCTTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTCATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTA-CTGCACTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCACCACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCCTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTCCCCATTTTTCTTCCATTTCAACCCCGCTCGATCGTTCATTGATGAATGCTGTAACCCTTCCGTCCTGCTGTTCGTACTCCATCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGAACAGCGACGATTTTTCGTACCA] [+] EMBL CNS08YME [TAAACAGTTTATTTACATCAAATAAAGACGTATCAAGACAATCGGTTCTCTCTCAGCTCTCAGCTTCCGTGGTTGAACTTACAGTCCATCTCTGCCAACGGGCAACCATCCGGATGGTTGACGAAAAACCAACAAACACGTTGCTTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTCATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTA CTGCACTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCACCACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCCTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTCCCCATTTTTCTTCCATTTCAACCCCGCTCGATCGTTCATTGATGAATGCTGTAACCCTTCCGTCCTGCTGTTCGTACTCCATCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCG ] [-] EMBL CNS08YMD [ TTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTCATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTAGCTGCACTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCACCACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCCTCCAGCGTTCCAAGAGGGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTACCAATTTTTCTTCCATTTCAACCCCGCTCGATCGTTCATTGATGAATGCTGTTACCCTTCCGTCCTGCTGTTCGTACTCCATCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGAACAGCGACGATTTTTCGTACCA] consensusID : consensus_4626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence [GCACTGTCCCTTTTCGACGCGGAAAATTTGATGATTGTGGCGCAACAGCGTTTGCAGCCCACCACACTCTGCCTTTAGCGCAACGAGCAGCTCCTGCGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCNTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCGAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTATCTTTTCCGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTGGGCACATTCTCCTCTGTTATACCATTTTGTGCTAATTTTTCTTCCATTTCAACCCTGCTCGATCGTTCATTGATGAATGCCGTTACCCTTTCGTCCTGCTGTTCGTACTCCATCTCCGGGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCAAATCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGAACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGTACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGGAACAGCGACGAGCTGGACGGTACGATCGTTTCGACGCGCAAGT] [-] EMBL BX622731 [GCACTGTCCCTTTTCGACGCGGAAAATTTGATGATTGTGGCGCAACAGCGTTTGCAGCCCACCACACTCTGCCTTTAGCGCAACGAGCAGCTCCTGCGGGATCGCTTTCACTAGTTCCTCTAGTGCTAGCGTCCNTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCTTTGCGAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTTTCGTACAATTGCGTATCTTTTCCGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGCCGGAACTGGGCACATTCTCCTCTGTTATACCATTTTGTGCTAATTTTTCTTCCATTTCAACCCTGCTCGATCGTTCATTGATGAATGCCGTTACCCTTTCGTCCTGCTGTTCGTACTCCATCTCCGGGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCAAGCGATCCGTCTCCACCGCAAATCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAAAATCCCCGTACTGGCTGAGGGAACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGTACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGTACGAGCTTCGTGCCGCAATCACCGGAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGGAACAGCGACGAGCTGGACGGTACGATCGTTTCGACGCGCAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4626#0 TAAACAGTTTATTTACATCAAATAAAGACGTATCAAGACAATCGGTTCTCTCTCAGCTCT 60 consensus_4626#1 ------------------------------------------------------------ consensus_4626#0 CAGCTTCCGTGGTTGAACTTACAGTCCATCTCTGCCAACGGGCAACCATCCGGATGGTTG 120 consensus_4626#1 ------------------------------------------------------------ consensus_4626#0 ACGAAAAACCAACAAACACGTTGCTTAAAGTTAATCGGTTTAAAGTTCTTCACCTTCTTC 180 consensus_4626#1 ------------------------------------------------------------ consensus_4626#0 ATTTTCCTCGCAAGGGCCGCATCCACCGTGTCCGATATTCGGGTCGGTATGCGTACTGCA 240 consensus_4626#1 ---------------------------------------------------------GCA 3 *** consensus_4626#0 CTGTTCCCTTTTCGACGCGGAAAATTTGATGATTGTTGCGCAACAGCGTTTGCAGCCCAC 300 consensus_4626#1 CTGT-CCCTTTTCGACGCGGAAAATTTGATGATTGTGGCGCAACAGCGTTTGCAGCCCAC 62 **** ******************************* *********************** consensus_4626#0 CACACTCTGCTTTTAGCGCAACGAGCAGCTCCTGTGGGATCGCTTTCACTAGTTCCTCTA 360 consensus_4626#1 CACACTCTGCCTTTAGCGCAACGAGCAGCTCCTGCGGGATCGCTTTCACTAGTTCCTCTA 122 ********** *********************** ************************* consensus_4626#0 GTGCTAGCGTCCCTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCT 420 consensus_4626#1 GTGCTAGCGTCCNTCCAGCGTTCCAGCTGCGTTCGGCAAACTCTGCCGGAATGCGTCGCT 182 ************ *********************************************** consensus_4626#0 TTGCCAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTT 480 consensus_4626#1 TTGCGAGCAGCTCCCCGAACACAATCGCCACAATCTTATCCACCACGGATCGATCGATTT 242 **** ******************************************************* consensus_4626#0 TCGTACAATTGCGTACCTTTTCTGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGC 540 consensus_4626#1 TCGTACAATTGCGTATCTTTTCCGTGCTTTCCCTTGGTTTAAATCCTGCCGACCAGCTGC 302 *************** ****** ************************************* consensus_4626#0 CGGAACTAGGCACCTTCTCCTCTGGCGTACCATTTTGTCCCCATTTTTCTTCCATTTCAA 600 consensus_4626#1 CGGAACTGGGCACATTCTCCTCTGTTATACCATTTTGTGCTAATTTTTCTTCCATTTCAA 362 ******* ***** ********** *********** * ****************** consensus_4626#0 CCCCGCTCGATCGTTCATTGATGAATGCTGTAACCCTTCCGTCCTGCTGTTCGTACTCCA 660 consensus_4626#1 CCCTGCTCGATCGTTCATTGATGAATGCCGTTACCCTTTCGTCCTGCTGTTCGTACTCCA 422 *** ************************ ** ****** ********************* consensus_4626#0 TCTCCGAGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCA 720 consensus_4626#1 TCTCCGGGTACGTTCTGGTGCTTCCCACCAGACACGTGCGCTTCGTACTGGGTATACGCA 482 ****** ***************************************************** consensus_4626#0 AGCGATCCGTCTCCACCGCGAACCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAA 780 consensus_4626#1 AGCGATCCGTCTCCACCGCAAATCCACAGACGCGTGCAATTTCTGCTGCATAATTCAGAA 542 ******************* ** ************************************* consensus_4626#0 AATCCCCGTACTGGCTGAGGGCACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGT 840 consensus_4626#1 AATCCCCGTACTGGCTGAGGGAACAGTTTTGCCGCTGATATTTACGCCCATCGAACTCGT 602 ********************* ************************************** consensus_4626#0 ACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGAACGAGCTTCGTGCCGCAATCACCG 900 consensus_4626#1 ACGCACAGCAGGGCAGCAGGAAAAAGCGGCACCGGTACGAGCTTCGTGCCGCAATCACCG 662 *********************************** ************************ consensus_4626#0 GAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGG-AACA 959 consensus_4626#1 GAATCCAGGGCGAAAGTTCGTCCGAATGGTTGCCAATGATCCAGTCGATGTCGGGGAACA 722 ******************************************************* **** consensus_4626#0 GCGACGATTTT--TCGTACCA------------------ 978 consensus_4626#1 GCGACGAGCTGGACGGTACGATCGTTTCGACGCGCAAGT 761 ******* * **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||