cluster # 4627

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Anopheles gambiae
cluster # 4627 cluster # 4627 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4627#0 length = 721 sequences # 1

consensus_4627#1 length = 628 sequences # 1
consensus_4627#2 length = 115 sequences # 1

consensusID : consensus_4627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGCAACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAGACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAGGACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTCGTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGCCGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACGATCAGAA]

[+] EMBL BX608309             [CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGCAACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAGACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAGGACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTCGTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGCCGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACGATCAGAA]




>consensus_4627#0
CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGC
AACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAG
ACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAG
GACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTC
GTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGC
CGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCC
TATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCC
GTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTAC
CGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGC
ACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATT
TATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTAT
TGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACGATCAGA
A

consensusID : consensus_4627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCGTACGATTCACGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCCCGTTTTCTCTCCCCCCAGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAATGCACCACTATTTGTAATGTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCAACAATTGTTCGTAACCAATGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACT]

[+] EMBL BM592450             [CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCGTACGATTCACGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCCCGTTTTCTCTCCCCCCAGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAATGCACCACTATTTGTAATGTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCAACAATTGTTCGTAACCAATGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACT]




>consensus_4627#1
CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAAATGAAAGTTAGCGTTA
TGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGT
TCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAAT
CGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTA
TGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCGTACGATTCA
CGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCCCGTTTTCTCTCCCCCC
AGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAATGCACCACTATTTGTAAT
GTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCAACAATTGTTCGTAACCAA
TGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAACTTTAAAAATTCTATGTA
AAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAA
GCAAACAAGGAACCATAACTTCAGCACT

consensusID : consensus_4627#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [GCCCACGCGTCCGGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAA]

[+] EMBL BM629599             [GCCCACGCGTCCGGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAA]




>consensus_4627#2
GCCCACGCGTCCGGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCG
CAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4627#0      CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGC 60
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      ----------------CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAA 44
                                                                                  

consensus_4627#0      AACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAG 120
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      ATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGC 104
                                                                                  

consensus_4627#0      ACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAG 180
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      GTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAAT 164
                                                                                  

consensus_4627#0      GACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTC 240
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      CGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTC 224
                                                                                  

consensus_4627#0      GTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGC 300
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      GCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTA 284
                                                                                  

consensus_4627#0      CGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCC 360
consensus_4627#2      ----------------------------GCCCACGCGTCCGGTTTGAACCGCTGTACTCC 32
consensus_4627#1      CACCTCGTACGATTCACGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCC 344
                                                                  *   ** * *** ***

consensus_4627#0      TATCCTTCCTGTCATATCATTCTCCCCGCAAACT-GCGCCTCTCATTACTTT-----TAA 414
consensus_4627#2      TATCCTTCCTGTCATATCATTCTCCCCGCAAACT-GCGCCTCTCATTACTTT-----TAA 86
consensus_4627#1      CGT--TTTCTCTCCCCCCAGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAA 402
                        *  ** ** **    ** **  *  * * * *    * **  * *** *      ***

consensus_4627#0      ATCCCCGTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATG 474
consensus_4627#2      ATCCCCGTTCTTTTTATCTCCCCCACAAA------------------------------- 115
consensus_4627#1      TGCACCACTATTTGTAATGTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCA 462
                        * **  * *** **      * *  **                               

consensus_4627#0      TTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTC 534
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      ACAATTGTTCGTAACCAATGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAA 522
                                                                                  

consensus_4627#0      GTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCG 594
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      CTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAA 582
                                                                                  

consensus_4627#0      TGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATG 654
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      CAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACT-------------- 628
                                                                                  

consensus_4627#0      TTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACG 714
consensus_4627#2      ------------------------------------------------------------
consensus_4627#1      ------------------------------------------------------------
                                                                                  

consensus_4627#0      ATCAGAA 721
consensus_4627#2      -------
consensus_4627#1      -------