These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 848 fasta sequence [AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACGAGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTGGTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAACAAGCGTACTAAATTCAAAATCACCACCAATCTGCAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATGAAATCTCGAAAGGTGCTGCGGCACAACACCCTGATTCAGGAGATTCTTTCCCAATCGAAAGTGAGTTTC] [+] EMBL BX627336 [AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACGAGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTGGTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAACAAGCGTACTAAATTCAAAATCACCACCAATCTGCAGAAG ] [+] EMBL BX626533 [ CCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAACAAGCGTACTAAATTCAAAATCACCACCAATCTGCAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATGAAATCTCGAAAGGTGCTGCGGCACAACACCCTGATTCAGGAGATTCTTTCCCAATCGAAAGTGAGTTTC] consensusID : consensus_4629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGTACTAAATTCAAAATCACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATTGAAATCTCGNAAAGGTGCTGCGGGGAACAANACCCTGGAT] [+] EMBL BX469685 [TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGTACTAAATTCAAAATCACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATTGAAATCTCGNAAAGGTGCTGCGGGGAACAANACCCTGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4629#0 AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACG 60 consensus_4629#1 ------------------------------------------------------------ consensus_4629#0 AGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTG 120 consensus_4629#1 ------------------------------------------------------------ consensus_4629#0 GTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATT 180 consensus_4629#1 ---------------TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATT 45 * * ********************************* consensus_4629#0 TGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTT 240 consensus_4629#1 TGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTT 105 ************************************************************ consensus_4629#0 CCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCT 300 consensus_4629#1 CCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCT 165 ************************************************************ consensus_4629#0 TCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCA 360 consensus_4629#1 TCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCA 225 ************************************************************ consensus_4629#0 ACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGT 420 consensus_4629#1 ACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGT 285 ************************************************************ consensus_4629#0 CGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGA 480 consensus_4629#1 CGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGA 345 ************************************************************ consensus_4629#0 TGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGC 540 consensus_4629#1 TGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGC 405 ************************************************************ consensus_4629#0 AGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACG 600 consensus_4629#1 AGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACG 465 ************************************************************ consensus_4629#0 AAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAA-CAAGCGT 659 consensus_4629#1 AAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGT 525 *************************** ************************ ******* consensus_4629#0 ACTAAATTCAAAATCACCACCAATCTGC-AGAAGGAAACGCCGCAGGAGGTGGAGCACAC 718 consensus_4629#1 ACTAAATTCAAAATCACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACAC 585 **************************** ******************************* consensus_4629#0 GATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCAT 778 consensus_4629#1 GATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCAT 645 ************************************************************ consensus_4629#0 -GAAATCTCGAAA-GGTGCTGCGGC--ACAACACCCTGATTCAGGAGATTCTTTCCCAAT 834 consensus_4629#1 TGAAATCTCGNAAAGGTGCTGCGGGGAACAANACCCTGGAT------------------- 686 ********* ** ********** **** ****** * consensus_4629#0 CGAAAGTGAGTTTC 848 consensus_4629#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||