These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGGCTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAATACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTCAACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCTCGCGATGCATCGTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTTGATCCGGGTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCTGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTAGAGTCTCGCTATAGAATGTGTGTTCGACAACGATACTACCTTAGACTTAGCTGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGG] [+] EMBL BM628886 [CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGGCTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAATACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTCAACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCTCGCGATGCATCGTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTTGATCCGGGTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCTGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTAGAGTCTCGCTATAGAATGTGTGTTCGACAACGATACTACCTTAGACTTAGCTGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGG] consensusID : consensus_4630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGCCGTCCATTCCTTTTGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTTTTCCTGCAACTTCCACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACCAAGCCCAGCGGGTCAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATCGTCGCAGCAGTTGGTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACCAGACCAAGCGTCGATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGGACTTCTAAAGGAATGCTGATTAGTGCTTCGGGTATGTTCGATACCCACTTCTTCAACACGAATCCAGCCTGCTTGAGCATCTCGGAAATCTGCCTTTGCATTTCAATTGCAT] [+] EMBL AL932515 [AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCGAATTGAAGTGTAACGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGCCGTCCATTCCTTTTGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTTTTCCTGCAACTTCCACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACCAAGCCCAGCGGGTCAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATCGTCGCAGCAGTTGGTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACCAGACCAAGCGTCGATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGGACTTCTAAAGGAATGCTGATTAGTGCTTCGGGTATGTTCGATACCCACTTCTTCAACACGAATCCAGCCTGCTTGAGCATCTCGGAAATCTGCCTTTGCATTTCAATTGCAT] consensusID : consensus_4630#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCCGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTCGAGTCTCGCTATAGAATGTGTATTCGACAACGATACTACTTTAGACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTGCCTCGGGCGATTC] [-] EMBL AL931217 [CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCGTGGTGCTGAATTGAGCCAATGTAGCACGGTCATGGAATCAGTCCAAGCGAAAGCATCGTATTCGCCGTTGAGGGACTGACTGACCTTCCGGAACAGTTGCGTTGCCAACCGCGCTGCACAAAGCTCGAGTCTCGCTATAGAATGTGTATTCGACAACGATACTACTTTAGACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGCAAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTGCCTCGGGCGATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4630#0 CCGCTCGAGATGGAGGTGCAATCAATATAATCATGTCCTGAATCGAAGCATGACCCTTGG 60 consensus_4630#2 ------------------------------------------------------------ consensus_4630#1 ------------------------------------------------------------ consensus_4630#0 CTGTCGGTGACGTAATTGCGGGTTTCGGTGTCCTCATGCATTGCACGAAACGTAAACAAT 120 consensus_4630#2 ------------------------------------------------------------ consensus_4630#1 ------------------------------------------------------------ consensus_4630#0 ACGCCATGGTTCGACGAAGTTTGAGGTTCTCTTATAGGCCATTCTTCCTGTTTGCTGCTC 180 consensus_4630#2 ------------------------------------------------------------ consensus_4630#1 -------------AATCGCCNCGAGGTGAAAATGTGTAGCTGCACGTTTGTTGCTTGCCG 47 consensus_4630#0 AACCAATGTGGCCCATGCCACCATCGTTCACAGGATTGCAATTTGTCTGGTAGTAGACCT 240 consensus_4630#2 ------------------------------------------------------------ consensus_4630#1 AATTGAAGTGTAACGCGGAATGCGCACTTCCCGGAGTGAATGCAGCTTGGAATGAAATGC 107 consensus_4630#0 CG-CGATGCATC------GTCTGCTGGGTTGTCTACACCAGGAACATGCCTCCAGCACTT 293 consensus_4630#2 ------------------------------------------------------------ consensus_4630#1 CGTCCATTCCTTTTGGAGATGTGATGGTAGCTCACGATCCCAATCCCACGGCTTACCGTT 167 consensus_4630#0 GATCCGGGTTTCTCCTTGAATTTGTGCCACCCTGTTGGCAACGAAAGGCTTCCACCTCCG 353 consensus_4630#2 --------------------------CCACCCTGTTGGCAACGAAAGGCTTCCACCTCCG 34 consensus_4630#1 TTCCTGCAACTTCCACAGCTGTTGCATAAAGAGCTTAGCGATGATATGGTTGGACTAACC 227 * ** ** * ** * * ** ** * consensus_4630#0 TGGTGCTG-AATTGAGCCAATGTAGCACGGTC--ATGGAATCAGTCCAAGCGAAAGCATC 410 consensus_4630#2 TGGTGCTG-AATTGAGCCAATGTAGCACGGTC--ATGGAATCAGTCCAAGCGAAAGCATC 91 consensus_4630#1 AAGCCCAGCGGGTCAAAGATTTTGGCGATGTAGGACAAAGCTAGCCTCTTTGTCAACATC 287 * * * * * * * * ** ** * * ** * * * **** consensus_4630#0 GTATTCGCCGTTGAGGGACTGA-CTGACCTTCTGGAACAGTTGC-GTTGCCAACCGCGCT 468 consensus_4630#2 GTATTCGCCGTTGAGGGACTGA-CTGACCTTCCGGAACAGTTGC-GTTGCCAACCGCGCT 149 consensus_4630#1 GTCGCAGCAGTTGGTAGATCGATCCGATATCGCAGCATATCAACTGCTGGCTCCCAAACC 347 ** ** **** ** ** * ** * * * * * * ** * ** * consensus_4630#0 GCACAAAGC-TAGAGTCTCGCTATAGAATGTGT-GTTCG---ACAACGATACTACCTTAG 523 consensus_4630#2 GCACAAAGC-TCGAGTCTCGCTATAGAATGTGT-ATTCG---ACAACGATACTACTTTAG 204 consensus_4630#1 AGACCAAGCGTCGATACAAATTGGGGATCTTGCCATTCATGAGTAGGAAGGATGGCAAGG 407 ** **** * ** * * ** ** *** * * * * consensus_4630#0 ACTTAGCTGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGC 583 consensus_4630#2 ACTTAGCAGCCAACAGCTGCACCGATGTTGTCGAATCGTTTTCTGCCCTGACGTAACAGC 264 consensus_4630#1 ACTTCTAAAGGAAT-GCTG-ATTAGTGCTTCGGGTATGTTCGATACCC-ACTTCTTCAAC 464 **** ** **** * ** * * *** * *** ** * consensus_4630#0 AAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTTGTTGCTT 643 consensus_4630#2 AAGCACCATATGCCACCTGAGAAGCATCCGCGAAAATGTGTAGCTGCACGTTGCCT--CG 322 consensus_4630#1 ACGAATC-CAGCCTGCTTGAG---CATCT-CGGAAATCTGCCTTTGCATTTCAATTGCAT 519 * * * * * * * **** **** ** **** ** **** * * consensus_4630#0 GCCGAATTGAAGTGTAACGCGG 665 consensus_4630#2 GGCGATTC-------------- 330 consensus_4630#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||