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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[CCGCAGGCTTGGTCCGATGGGCTAATTCATGCGATAAGCAACGTAAAAAAACAATTATTCGTATCCGATTTGGCCGTCGTTATCAAGGATAAGTATCCCAAAGCCCTTCATCATTTTTTGGTACTACCCTGGAAGGACATAGATTCGGTATATGATGTGCGTATGATATACTAAAGCAGTTGCGCTTGGTGATTCGACCACGAATGAATTGCGCACTATCCGCTTTTATTTTAGCTATCGTCCGACGACGATGGACTGTTACAGAACATGTACGAGCTAGGCTTAAAAGCCGTCGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAACATGTATTTACAGATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGCAAGCAACACGT]
[+] EMBL BM588698 [CCGCAGGCTTGGTCCGATGGGCTAATTCATGCGATAAGCAACGTAAAAAAACAATTATTCGTATCCGATTTGGCCGTCGTTATCAAGGATAAGTATCCCAAAGCCCTTCATCATTTTTTGGTACTACCCTGGAAGGACATAGATTCGGTATATGATGTGCGTATGATATACTAAAGCAGTTGCGCTTGGTGATTCGACCACGAATGAATTGCGCACTATCCGCTTTTATTTTAGCTATCGTCCGACGACGATGGACTGTTACAGAACATGTACGAGCTAGGCTTAAAAGCCGTCGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAACATGTATTTACAGATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGCAAGCAACACGT]
consensusID : consensus_4633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGGAGCGGGACACATACATCGACCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTTCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCGAAAGCACAACCAGCTGAAACAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATATACAGGTAAAGGGATTGAATAGTCGAATTTAGGTTGCCAGTCCGATTAGCTTCAAGCGTGCTACAAGAACATTGTTAGAGAGATTCGAGGCCAAAGCAATATTCAGTAGTACTGAATTGGCACGGGGAAAATTTCTCTACGTGTTTTGCTGTATCTGCCTTGATCGAGGCAAATGCCAATATGCGGACAAAGTGCCCCTCAAAATAGCAGAATATATTTTTCAGATCGTTTTCCATACACTTCGCTAAACAAGAACACAAAGCCTGTGAATTGGCGCAACGGAGTACGGGAGCAAAGCTTATGCTCATTCTAGTTAGAAACTTGCGTTTGAAAAGAACTGGTTCCG]
[+] EMBL BX628931 [TTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGGAGCGGGACACATACATCGACCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTTCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCGAAAGCACAACCAGCTGAAACAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATATACAGGTAAAGGGATTGAATAGTCGAATTTAGGTTGCCAGTCCGATTAGCTTCAAGCGTGCTACAAGAACATTGTTAGAGAGATTCGAGGCCAAAGCAATATTCAGTAGTACTGAATTGGCACGGGGAAAATTTCTCTACGTGTTTTGCTGTATCTGCCTTGATCGAGGCAAATGCCAATATGCGGACAAAGTGCCCCTCAAAATAGCAGAATATATTTTTCAGATCGTTTTCCATACACTTCGCTAAACAAGAACACAAAGCCTGTGAATTGGCGCAACGGAGTACGGGAGCAAAGCTTATGCTCATTCTAGTTAGAAACTTGCGTTTGAAAAGAACTGGTTCCG]
consensusID : consensus_4633#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[CATGGACGTTACGAACTGTACGAGCTAGGCTTAAAAGCCGTTGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCCGAAAGCACAACCAGCTGAAANCAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATGTACAGATCGTTTTCCATACACTTCGCTAAACAAAGANCACCAAGCCTGCGANTCGGCACAACGGAGTA]
[+] EMBL BX619569 [CATGGACGTTACGAACTGTACGAGCTAGGCTTAAAAGCCGTTGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCCGAAAGCACAACCAGCTGAAANCAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATGTACAGATCGTTTTCCATACACTTCGCTAAACAAAGANCACCAAGCCTGCGANTCGGCACAACGGAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4633#0 -------CCGCAGGCTTGGTCCGATGGGCTAATTCATGCGATAAGCAACGTAAAAAAACA 53
consensus_4633#2 ------------------------------------------------------------
consensus_4633#1 TTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGGAGCGGGA 60
consensus_4633#0 ATTATTCGTATCCGATTTGGCCGTCGTTATCAAGGATAAGTATCCCAAAGCCCTTCATCA 113
consensus_4633#2 ------------------------------------------------------------
consensus_4633#1 CACATACAT---CGACCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAA 117
consensus_4633#0 TTTT-TTGGTAC-TACCCTGGAAGGACATAGATTCGGTATATGATGTGCGTATGATATAC 171
consensus_4633#2 ------------------------------------------------------------
consensus_4633#1 TGCAATCAGTGCATGTACAACCCGAACAATTTTTCGGACCTAAAGCTGCACCTGAAGCAA 177
consensus_4633#0 TAAAGCAGTTGCGCTTGGTGATTCGACCACGAATGAATTGCGCACTATCCGCTTTTATTT 231
consensus_4633#2 ------------------------------------------------------------
consensus_4633#1 CAC----GTGGAAAGTGATATCGAAAGCACAACCAGCTGAAACAAGTGTTCGTGTGAATC 233
consensus_4633#0 TAGCTATCGTCCGACGACGATGGACTGTTACAGAACATGTACGAGCTAGGCTTAAAAGCC 291
consensus_4633#2 ------------------CATGGAC-GTTAC-GAAC-TGTACGAGCTAGGCTTAAAAGCC 39
consensus_4633#1 AGTCTCAGGGAGGCGTTTTATATACAGGTAAAGGGATTGAAT-AGTCGAATTTAG--GTT 290
** ** * ** * ** * ** *** *
consensus_4633#0 GTCGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCC 351
consensus_4633#2 GTTGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCC 99
consensus_4633#1 GCCAGTCCGATTAGCTTCA-AGCGTGCTACAAGAACATTGTTAGAGAGATTCGAGGCCAA 349
* ** *** * ** *** ** * *** * ** * *
consensus_4633#0 ATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCT-ATCGCA 410
consensus_4633#2 ATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCT-ATCGCA 158
consensus_4633#1 AGCAATATTCAGTAGTACTGAATTGGCACGGG-GAAAATTTCTCTACGTGTTTTGCTGTA 408
* * * * * * * ** ** *** *** ***** * * *
consensus_4633#0 CCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAACATGTATTT 470
consensus_4633#2 CCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAA--------- 209
consensus_4633#1 TCTGC----CTTGATCGAGGCAAATGCCAATATGCGGACAAAGTGCCCCTC--------- 455
* ** ** ** *** ** * * * ***
consensus_4633#0 ACAGATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTAC 530
consensus_4633#2 -----TGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTAC 264
consensus_4633#1 ---AAAATAGCAGAA----TATATTTTTCAGATCGTTTTCCATACACTTCGCTAAACAAG 508
*** *** ** * * * * * * * **** * * *
consensus_4633#0 ATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAAT 590
consensus_4633#2 ATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAAT 324
consensus_4633#1 AACACAAAGCCTGTGAA----TTGGCGCAACGGAGT--ACGGGAGCAAAGCTTATGCT-C 561
* * **** * * * * **** * * * * * * * * *
consensus_4633#0 TTTGCGGACCTAAAGCTGCACCTGCAAGCAACACGT------------------------ 626
consensus_4633#2 TTTGCGGACCTAAAGCTGCACCTG-AAGCAACACGTGGAAAGTGATATCCGAAAGCACAA 383
consensus_4633#1 ATTCTAGTTAGAAACTTGCGTTTGAAAAGAACTGGTTCCG-------------------- 601
** * *** *** ** ** *** **
consensus_4633#0 ------------------------------------------------------------
consensus_4633#2 CCAGCTGAAANCAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATGTACAGATCG 443
consensus_4633#1 ------------------------------------------------------------
consensus_4633#0 -----------------------------------------------------------
consensus_4633#2 TTTTCCATACACTTCGCTAAACAAAGANCACCAAGCCTGCGANTCGGCACAACGGAGTA 502
consensus_4633#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||