These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence [GGTTTATCTTTTTTTAGACGGTATTTAGAAGTTTGTGATTTTTTTTCTCTGCTTCCGCTATTTCACTACATCGGGGCATTCAAATGCAGCCATTTCAGCACAGACACCCACCATTCCTTCTGCTTCTTTTCTGTTCACAACAGTAAAGTGGTCTTTTTTTTTCCTTTTTCCTGCTAAGCGTTCCTTTCTTCTTATCGTCTCTTATTTGTTTCTTTATCAGAATGGTTGATGGCTTATGGGTGTGTGTATGTGTTAGTGTTAGTGTGTGTTTTACAATGTTCCATGTTGTCCACTAAATTATCATATGTACACAGAAGTCATTAAAGCATGTTTTCACTTCCACGTTGGATCCGTCCACTGTATGTATGTTCTCGCTGTACTCTTTTTCGCGAGTTTTTTTTTCTTGTTTAAATTATGTATGTATGTATATATATATATGTTGGTTTTGTTTTTAACAGTGTCTATTGTTAAACCTTTCCTTTGCCACTTTCAACCGTTCTATTTTGGTTGAAGTTGCTTGGTTTTCTCTTCTCTTCTGCTGTTCTTAATTTGGTTTACAGGATCGGTTGGCTTCAATACGTTTCTTACACTAAAAAAAAAACACTCACACTGTTACATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCTCAATTGGCGCCCGTACGGCTCTATCGTTTAGGATACCTTGTTAGTGTTCTCTCGTTTTGGTTATATATTGTTTTCGTTTTCTTCTTCTTCCTTCTCCTTCTTTTCTCAATTTCATTTAGTGCCACGGTTGTCTGGGACAAGCCAACATGGCAAACATTAGTTTTTTTTCACTCCCTTTTGTCGAGACACATTTAATGTTCTCTTCTGTTGTTGTGTCGTTTGTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTAAACCAAATTAAGAACAGCAGAAGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA] [+] EMBL BX622836 [GGTTTATCTTTTTTTAGACGGTATTTAGAAGTTTGTGATTTTTTTTCTCTGCTTCCGCTATTTCACTACATCGGGGCATTCAAATGCAGCCATTTCAGCACAGACACCCACCATTCCTTCTGCTTCTTTTCTGTTCACAACAGTAAAGTGGTCTTTTTTTTTCCTTTTTCCTGCTAAGCGTTCCTTTCTTCTTATCGTCTCTTATTTGTTTCTTTATCAGAATGGTTGATGGCTTATGGGTGTGTGTATGTGTTAGTGTTAGTGTGTGTTTTACAATGTTCCATGTTGTCCACTAAATTATCATATGTACACAGAAGTCATTAAAGCATGTTTTCACTTCCACGTTGGATCCGTCCACTGTATGTATGTTCTCGCTGTACTCTTTTTCGCGAGTTTTTTTTTCTTGTTTAAATTATGTATGTATGTATATATATATATGTTGGTTTTGTTTTTAACAGTGTCTATTGTTAAACCTTTCCTTTGCCACTTTCAACCGTTCTATTTTGGTTGAAGTTGCTTGGTTTTCTCTTCTCTTCTGCTGTTCTTAATTTGGTTTACAGGATCGGTTGGCTTCAATACGTTTCTTACACTAAAAAAAAAACACTCACACTGTTACATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCTCAATTGGCGCCCGTACGGCT ] [-] EMBL BX628011 [ AAAAAAAAACACTCACACTGTTAAATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCTCAATTGGCGCCCGTACGGCTCTATCGTTTAGGATACCTTGTTAGTGTTCTCTCGTTTTGGTTATATATTGTTTTCGTTTTCTTCTTCTTCCTTCTCCTTCTTTTCTCAATTTCATTTAGTGCCACGGTTGTCTGGGACAAGCCAACATGGCAAACATTAGTTTTTTTTCACTCCCTTTTGTCGAGACACATTTAATGTTCTCTTCTGTTGTTGTGTCGTTTGTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTAAACCAAATTAAGAACAGCAGAAGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA] consensusID : consensus_4642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTCGCATCAGTTCGGTCTGTTTTTCGGTCTTAAATGATCTGCTAGTTTGCGATCATCTTTCGTTTCACTACTAATCACGTGTTTGTCGCGTTGGAGAACAAAAATGTACCGATTTTAGACCTGTTTTGCGTCTCGTAACCGCGCCCTTCTTTGTTTAATTGTATTCACTACGTTCAACGGAAATGCAACGAATCAAATCGG] [-] EMBL BM651593 [GTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTCGCATCAGTTCGGTCTGTTTTTCGGTCTTAAATGATCTGCTAGTTTGCGATCATCTTTCGTTTCACTACTAATCACGTGTTTGTCGCGTTGGAGAACAAAAATGTACCGATTTTAGACCTGTTTTGCGTCTCGTAACCGCGCCCTTCTTTGTTTAATTGTATTCACTACGTTCAACGGAAATGCAACGAATCAAATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4642#0 GGTTTATCTTTTTTTAGACGGTATTTAGAAGTTTGTGATTTTTTTTCTCTGCTTCCGCTA 60 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TTTCACTACATCGGGGCATTCAAATGCAGCCATTTCAGCACAGACACCCACCATTCCTTC 120 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TGCTTCTTTTCTGTTCACAACAGTAAAGTGGTCTTTTTTTTTCCTTTTTCCTGCTAAGCG 180 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TTCCTTTCTTCTTATCGTCTCTTATTTGTTTCTTTATCAGAATGGTTGATGGCTTATGGG 240 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TGTGTGTATGTGTTAGTGTTAGTGTGTGTTTTACAATGTTCCATGTTGTCCACTAAATTA 300 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TCATATGTACACAGAAGTCATTAAAGCATGTTTTCACTTCCACGTTGGATCCGTCCACTG 360 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TATGTATGTTCTCGCTGTACTCTTTTTCGCGAGTTTTTTTTTCTTGTTTAAATTATGTAT 420 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GTATGTATATATATATATGTTGGTTTTGTTTTTAACAGTGTCTATTGTTAAACCTTTCCT 480 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TTGCCACTTTCAACCGTTCTATTTTGGTTGAAGTTGCTTGGTTTTCTCTTCTCTTCTGCT 540 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GTTCTTAATTTGGTTTACAGGATCGGTTGGCTTCAATACGTTTCTTACACTAAAAAAAAA 600 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 ACACTCACACTGTTACATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCT 660 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CAATTGGCGCCCGTACGGCTCTATCGTTTAGGATACCTTGTTAGTGTTCTCTCGTTTTGG 720 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TTATATATTGTTTTCGTTTTCTTCTTCTTCCTTCTCCTTCTTTTCTCAATTTCATTTAGT 780 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GCCACGGTTGTCTGGGACAAGCCAACATGGCAAACATTAGTTTTTTTTCACTCCCTTTTG 840 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TCGAGACACATTTAATGTTCTCTTCTGTTGTTGTGTCGTTTGTCCTTTATTGTTTTCTAA 900 consensus_4642#1 -----------------------------------------GTCCTTTATTGTTTTCTAA 19 ******************* consensus_4642#0 TTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACT 960 consensus_4642#1 TTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACT 79 ************************************************************ consensus_4642#0 GCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTA 1020 consensus_4642#1 GCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTA 139 ************************************************************ consensus_4642#0 CCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTT-GTGTT 1079 consensus_4642#1 CCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTTGTGTT 199 ****************************************************** ***** consensus_4642#0 GCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTAAACCAAATTAAGAACAGCAGAAGAG 1139 consensus_4642#1 GCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTCGCATCAGTTCGGTCTGTTTTTCGGT 259 ********************************** * ** * * consensus_4642#0 AAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA---------- 1189 consensus_4642#1 CTTAAATGATCTGCTAGTTTGCGATCATCTTTCGTTTCACTACTAATCACGTGTTTGTCG 319 ** * * * * ** ** ** ** * ** consensus_4642#0 ------------------------------------------------------------ consensus_4642#1 CGTTGGAGAACAAAAATGTACCGATTTTAGACCTGTTTTGCGTCTCGTAACCGCGCCCTT 379 consensus_4642#0 ----------------------------------------------------- consensus_4642#1 CTTTGTTTAATTGTATTCACTACGTTCAACGGAAATGCAACGAATCAAATCGG 432 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||