These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [CCGGACCGACCGGGTGCGCATACGTGTAGAAACGACGCTTCCCTCGACCGAATTTCCGTACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCGGTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAGATAAAAAAGGAGCAAATTGCTCCGTGC] [+] EMBL BM654612 [CCGGACCGACCGGGTGCGCATACGTGTAGAAACGACGCTTCCCTCGACCGAATTTCCGTACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCGGTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGAT ] [+] EMBL BM655221 [ ccgcccaCGCGTCCG GTAGAAACGACGCTTCCCTCGACCGAATTTCCGTACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCGGTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAGATAAAAAAGGAGCAAATTGCTCCGTGC] consensusID : consensus_4654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCGCCTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACCTCATCCAAGTAGTCGACGACAAAGTGTGCCCGTGAGTGCATGTGGTGTCTGGCTCTGTCAATGTGTTGTTGTTGACAGTGTGTGTTTTTTTCTGCAATAAAGTTATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTTCGAGTCCAAGATTACCTTCGAAATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGGCAACAACTACACGCTGTTCTGGCAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCACTATCAGGGCACCGTCGCCAGCGGTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGGTGCGTCGGCCGCCACCGCAGCCGCAGCGGCC] [+] EMBL BM592861 [CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCGCCTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACCTCATCCAAGTAGTCGACGACAAAGTGTGCCCGTGAGTGCATGTGGTGTCTGGCTCTGTCAATGTGTTGTTGTTGACAGTGTGTGTTTTTTTCTGCAATAAAGTTATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTTCGAGTCCAAGATTACCTTCGAAATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGGCAACAACTACACGCTGTTCTGGCAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCACTATCAGGGCACCGTCGCCAGCGGTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGGTGCGTCGGCCGCCACCGCAGCCGCAGCGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4654#0 CCGGACCGACCGGGTGCGCATACGTGTA-GAAACGACGCTTCCCTCGACCGAATTTCCGT 59 consensus_4654#1 ---------CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCC--CGGCTTATCCCCTGT 49 *** *** * ** * * * ****** ** * * * ** consensus_4654#0 ---ACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAA---AGCAAA 113 consensus_4654#1 GAAACCGAGCCTAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAG 109 **** ** * ** * * * ** * *** ** ** consensus_4654#0 ACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAA 173 consensus_4654#1 TTGATCTGTGCCCCGCGCCTTGCTGTTGACGAGAA-CGAATAT--TCGAATCCGAAGTTC 166 **** ** * * *** *** * **** * ** **** * consensus_4654#0 TTGTGA-ATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGC 232 consensus_4654#1 GCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGT-GCATCTGTGTTCAGAATC 225 * * ** ** * * ** ** *** *** * ** * * consensus_4654#0 CACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTT 292 consensus_4654#1 CGCTCAAACGAAAA-------TAAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACC 278 * * * * *** * * * **** * ** * *** ** ** consensus_4654#0 GCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTG 352 consensus_4654#1 TCATCCAAGTAG---TCGACGACA--------AAGTGTGCCCGTGAGTGCATGTGGTGTC 327 ** * ** **** *** * * * * **** **** * consensus_4654#0 TTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAAC 412 consensus_4654#1 TGGCTCTGT-CAATGTGTTGTTGTTGA--CAGTGTGTGTT--TTTTTCTGCAATAAAGTT 382 * * * * * * **** * ** * ** * *** *** ** ** * consensus_4654#0 GCAAATCGGTTTTGTGTGTTGGAGCTGA--AATAATCTCTTGCACAGAGTGTGTGTGTGT 470 consensus_4654#1 ATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTTCGAGTCCAAGATTACCTTCGAA 442 * * **** * * * * *** * ** ** * ** * * consensus_4654#0 TTCCCGGCTTATCCC----CTGTGAAACCGAGCC----TAACAACAAACCGGTGTGCCAG 522 consensus_4654#1 ATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGGCAACAACTACACGCTGTTCTGG 502 * *** * *** * ** ** * ** ** ****** * ** *** * * consensus_4654#0 TTGG--CTGTGTTATCAA-AGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGAC 579 consensus_4654#1 CAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCACTATCAGGGCACCGTCGCCAGC 562 * *** * ** ** * ** * * * * * * * * consensus_4654#0 GAGAACGAATATTCGAAT--CCGAAGTTCGCACAGCAGAGAT-TAAGCGATTTTTGGAGT 636 consensus_4654#1 G-GTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGGTGCGTCGGCCGCCACCGCAGC 621 * * ** ** * *** ** * ** ** * * ** * ** consensus_4654#0 -GAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAGATAAAAAAGGAG 695 consensus_4654#1 CGCAGCGGCC-------------------------------------------------- 631 * * * consensus_4654#0 CAAATTGCTCCGTGC 710 consensus_4654#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||