cluster # 4659

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Anopheles gambiae
cluster # 4659 cluster # 4659 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4659#0 length = 915 sequences # 2

consensus_4659#1 length = 243 sequences # 1

consensusID : consensus_4659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 915
fasta sequence

                              [TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGTGTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCACGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAATGTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGTAATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGAAGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTAAAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTCATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGGAAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTCCCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTAGAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTG---CGGGTGCATACTTTGCATTCAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGTGGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGGTTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAAACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAAACGGACTGAACTGGA]

[+] EMBL BX613961             [TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGTGTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCACGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAATGTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGTAATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGAAGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTAAAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTCATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGGAAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTCCCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTAGAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTG   CGGGTGCATACTTTGCATTCAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGTGGGGAGGG                                                                                                                                                                                           ]
[+] EMBL BX611055             [                                                                                                                                                                                                                                                                                                                                                         GAAGAAAAGACAGTAAAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTCATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGGAAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTCCCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTAGAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTGCAACGGGTGCATACTTTGCATTCAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAGGGAGAAGGGAGGAGGCATGGGTGGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGGTTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAAACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAAACGGACTGAACTGGA]




>consensus_4659#0
TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGT
GTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCA
CGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAAT
GTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGT
AATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGA
AGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTA
AAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTC
ATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGG
AAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTC
CCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTA
GAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTGCGGGTGCATACTTTGCATT
CAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGT
GGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGG
TTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAA
ACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAA
ACGGACTGAACTGGA

consensusID : consensus_4659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTAAAACTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGCATTGACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGGAAAGAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGCCCCACC]

[+] EMBL BX613962             [ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTAAAACTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGCATTGACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGGAAAGAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGCCCCACC]




>consensus_4659#1
ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTAAAA
CTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGCATT
GACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGGAAA
GAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGCCCC
ACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4659#0      TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGT 60
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      GTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCA 120
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      CGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAAT 180
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      GTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGT 240
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      AATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGA 300
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      AGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTA 360
consensus_4659#1      ---ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTA 57
                          **** *** ***  *********************** ******************

consensus_4659#0      AAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTC 420
consensus_4659#1      AAACTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGC 117
                      ******** *********************** * **** **** ***********   *

consensus_4659#0      ATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGG 480
consensus_4659#1      ATTGACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGG 177
                      ************* ********** **************  ***** ****** ******

consensus_4659#0      AAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTC 540
consensus_4659#1      AAAGAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGC 237
                      ******* * ** **** **** * * ***** * **** ******  ** ******  *

consensus_4659#0      CCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTA 600
consensus_4659#1      CCCACC------------------------------------------------------ 243
                      ******                                                      

consensus_4659#0      GAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTGCGGGTGCATACTTTGCATT 660
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      CAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGT 720
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      GGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGG 780
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      TTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAA 840
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      ACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAA 900
consensus_4659#1      ------------------------------------------------------------
                                                                                  

consensus_4659#0      ACGGACTGAACTGGA 915
consensus_4659#1      ---------------