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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence
[TCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTTGTGCCCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTATAGAACATCCCCCAAAACCCCATTCACTAACGAACGATCGTTATAAAAACAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCACACCGTCCACGTACCCGTGTCCTTGTTTGCACGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTACACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGTTCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACCTAACATCAAAGGAGGATAGCAACAGTTTGGATATAGTAGGACAATACAAACCGGAGAAAAAAAAAAAAAAAAAGGCCACATTTTCCC]
[+] EMBL CNS08M4R [TCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTTGTGCCCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTATAGAACATCCCCCAAAACCCCATTCACTAACGAACGATCGTTATAAAAACAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCACACCGTCCACGTACCCGTGTCCTTGTTTGCACGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTACACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGTTCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACCTAACATCAAAGGAGGATAGCAACAGTTTGGATATAGTAGGACAATACAAACCGGAGAAAAAAAAAAAAAAAAAGGCCACATTTTCCC]
[-] EMBL CNS08M4S [ AACGAAAGGTTACACGCAACGCACCACACCGTCCACGTACCCGTGTCCTTGTTTGCA GTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTACACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGGACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGTTCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACCTAACATCAAAGGAGGATAGCAACAG ]
consensusID : consensus_4662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTAGTGCTCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTAAAGAACATCCCCCGAAACCCCATTCACTTACGAACGATCGCTATAAAACCAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCGCACCGTCCACGTACCCGTGTCCTTGTTTGCAGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATCGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTG]
[+] EMBL BM655964 [CCGCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTAGTGCTCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTAAAGAACATCCCCCGAAACCCCATTCACTTACGAACGATCGCTATAAAACCAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCGCACCGTCCACGTACCCGTGTCCTTGTTTGCAGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATCGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4662#0 --TCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGA 58
consensus_4662#1 CCGCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGA 60
*********************************************************
consensus_4662#0 ATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTTGTGCCCCACAGTGCAGT 118
consensus_4662#1 ATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTAGTGCTCCACAGTGCAGT 120
****************************************** **** ************
consensus_4662#0 AGTGTTATTTTGAATCTATCGAAACCCAGCTAGTATAGAACATCCCCCAAAACCCCATTC 178
consensus_4662#1 AGTGTTATTTTGAATCTATCGAAACCCAGCTAGTAAAGAACATCCCCCGAAACCCCATTC 180
*********************************** ************ ***********
consensus_4662#0 ACTAACGAACGATCGTTATAAAAACAACCTTCAATTGAGTTAGACAACATTTGGCGAGCT 238
consensus_4662#1 ACTTACGAACGATCGCTATAAAACCAACCTTCAATTGAGTTAGACAACATTTGGCGAGCT 240
*** *********** ******* ************************************
consensus_4662#0 TTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCACACCGTCCAC 298
consensus_4662#1 TTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCGCACCGTCCAC 300
************************************************* **********
consensus_4662#0 GTACCCGTGTCCTTGTTTGCACGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAA 358
consensus_4662#1 GTACCCGTGTCCTTGTTTGCA-GTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAA 359
********************* **************************************
consensus_4662#0 AATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAG 418
consensus_4662#1 AATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAG 419
************************************************************
consensus_4662#0 CCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAG 478
consensus_4662#1 CCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAG 479
************************************************************
consensus_4662#0 CTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTA 538
consensus_4662#1 CTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGAT-------------------- 519
****************************************
consensus_4662#0 CACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGT 598
consensus_4662#1 -------CGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGT 572
*****************************************************
consensus_4662#0 TCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCA 658
consensus_4662#1 TCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCA 632
************************************************************
consensus_4662#0 AATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGT 718
consensus_4662#1 AATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTG- 691
***********************************************************
consensus_4662#0 TCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACC 778
consensus_4662#1 ------------------------------------------------------------
consensus_4662#0 TAACATCAAAGGAGGATAGCAACAGTTTGGATATAGTAGGACAATACAAACCGGAGAAAA 838
consensus_4662#1 ------------------------------------------------------------
consensus_4662#0 AAAAAAAAAAAAAGGCCACATTTTCCC 865
consensus_4662#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||