These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1003 fasta sequence [CCGAGGNTGCATTGTGTATTTGAGTGTGTGTGTGTTTTTTTGTCGATTACTCTCTCACGCTCTCTTCCAGAGAGTTTGTGAGTGTGTGTTTGCGAGTGTGATTGCTCTCGGTGGGTTTAGAGAACGTAACGTGTAACGTTCGTCTGCCAACACGTCTGCTTAGAAGCGCAAACAGTTGAGAGGAGAAGAACACAACGCGAAGAAGAAGAAGAAGTGCAACCAGAAAATGTCCTCCAGCTAAAAACGGTCTCACAGTACCAAACCGGATCAGGGTTTTTGTCCTGGGATAAAGCAACCAAAGCAACCCGCGGAAATTCTAGTCTGAGAGCAAAGTGTGTGAGCTGACTGTGTGTGACAGTTCTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGCAACTCGTGTTAATCAAAACTACCCACCAACTACGGGAAGCAAATTGTCTGTGATATTACGTTGAGGGAAGAATTTGCTATTGTGAAAAGGGTGCTGCGACAGCATCAGAAACCGGGTTGAAAAACGCGTTCCTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCATCACCACCACCACCATAACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAGTCCGGAAACAGGCTACTCCG] [+] EMBL AL931258 [CCGAGGNTGCATTGTGTATTTGAGTGTGTGTGTGTTTTTTTGTCGATTACTCTCTCACGCTCTCTTCCAGAGAGTTTGTGAGTGTGTGTTTGCGAGTGTGATTGCTCTCGGTGGGTTTAGAGAACGTAACGTGTAACGTTCGTCTGCCAACACGTCTGCTTAGAAGCGCAAACAGTTGAGAGGAGAAGAACACAACGCGAAGAAGAAGAAGAAGTGCAACCAGAAAATGTCCTCCAGCTAAAAACGGTCTCACAGTACCAAACCGGATCAGGGTTTTTGTCCTGGGATAAAGCAACCAAAGCAACCCGCGGAAATTCTAGTCTGAGAGCAAAGTGTGTGAGCTGACTGTGTGTGACAGTTCTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGT ] [+] EMBL BM625048 [ ccgGAGCTGACTGTGTGTGACAGTTCTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGCAACTCGTGTTAATCAAAACTACCCACCAACTACGGGAAGCAAATTGTCTGTGATATTACGTTGAGGGAAGAATTTGCTATTGTGAAAAGGGTGCTGCGACAGCATCAGAAACCGGGTTGAAAAACGCGTTCCTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCATCACCACCACCACCATAACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAGTCCGGAAACAGGCTACTCCG] consensusID : consensus_4672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCGAATATTTGGGAACCAAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGTGACTCGTGTTTAATCAAAACTACCCACCAAACGGGAAGCAAATTGTCTGTGATATTGCGTTGAGGGAAGAATTTGCTATTGTGAAAGGGTGCTGCGACAGCATCAGACACCGGGTTGAAAAACGCGTCCGTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAAAAAAAAACAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCACCACCACCACCATCACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAG] [+] EMBL BM636695 [CCGAATATTTGGGAACCAAAATTTCTCCCCGTGTGTGTGTTGTGCCTGTGCGAGTGTGACTCGTGTTTAATCAAAACTACCCACCAAACGGGAAGCAAATTGTCTGTGATATTGCGTTGAGGGAAGAATTTGCTATTGTGAAAGGGTGCTGCGACAGCATCAGACACCGGGTTGAAAAACGCGTCCGTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAAAAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGCAAAGCCAAAAAAAAAAAAAAAAAACAAAAACAACACAAAACCGACGCGCCAAGATTAACGAGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTAAGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGGCGCCACCGCACCACCACCACCACCATCACCATCATCACCAGCATCATCACCCTCACAGTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGCAGCAGAACAACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4672#0 CCGAGGNTGCATTGTGTATTTGAGTGTGTGTGTGTTTTTTTGTCGATTACTCTCTCACGC 60 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 TCTCTTCCAGAGAGTTTGTGAGTGTGTGTTTGCGAGTGTGATTGCTCTCGGTGGGTTTAG 120 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AGAACGTAACGTGTAACGTTCGTCTGCCAACACGTCTGCTTAGAAGCGCAAACAGTTGAG 180 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AGGAGAAGAACACAACGCGAAGAAGAAGAAGAAGTGCAACCAGAAAATGTCCTCCAGCTA 240 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AAAACGGTCTCACAGTACCAAACCGGATCAGGGTTTTTGTCCTGGGATAAAGCAACCAAA 300 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 GCAACCCGCGGAAATTCTAGTCTGAGAGCAAAGTGTGTGAGCTGACTGTGTGTGACAGTT 360 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 CTTTCCAAAAGTCTTGAAAATATTTGGGAACCCAAATTTCTCCCCGTGTGTGTGTTGTGC 420 consensus_4672#1 ---------------CCGAATATTTGGGAACCAAAATTTCTCCCCGTGTGTGTGTTGTGC 45 ************** *************************** consensus_4672#0 CTGTGCGAGTGCAACTCGTGTT-AATCAAAACTACCCACCAACTACGGGAAGCAAATTGT 479 consensus_4672#1 CTGTGCGAGTGTGACTCGTGTTTAATCAAAACTACCCACCAA--ACGGGAAGCAAATTGT 103 *********** ********* ******************* **************** consensus_4672#0 CTGTGATATTACGTTGAGGGAAGAATTTGCTATTGTGAAAAGGGTGCTGCGACAGCATCA 539 consensus_4672#1 CTGTGATATTGCGTTGAGGGAAGAATTTGCTATTGTGAAA-GGGTGCTGCGACAGCATCA 162 ********** ***************************** ******************* consensus_4672#0 GAAACCGGGTTGAAAAACGCGTTCCTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAA 599 consensus_4672#1 GACACCGGGTTGAAAAACGCGTCCGTTTTGTGAAGCTGCTTAAAGCAAAACAATCAAAAA 222 ** ******************* * *********************************** consensus_4672#0 AAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGC 659 consensus_4672#1 AAGACAGTATAAACATTATCGCAAAGCTATCAAGAAGCAAACTAGAAGTTCCTTGTTGGC 282 ************************************************************ consensus_4672#0 AAAGCCAAAAAAAAAAA-------------CAACACAAAACCGACGCGCCAAGATTAACG 706 consensus_4672#1 AAAGCCAAAAAAAAAAAAAAAAAACAAAAACAACACAAAACCGACGCGCCAAGATTAACG 342 ***************** ****************************** consensus_4672#0 AGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTA 766 consensus_4672#1 AGTTCAGGAAAATGGTTGGAAGCAACGGTACCCTAATGACGATGCGTCTCGTCCGCAGTA 402 ************************************************************ consensus_4672#0 AGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGG 826 consensus_4672#1 AGCTGAGAAAGCGGGAAGAGTCGTCGACGGTGAGCCCGGTGACGGCGGGCAACGTGGAGG 462 ************************************************************ consensus_4672#0 CGCCACCGCACCATCACCACCACCACCATAACCATCATCACCAGCATCATCACCCTCACA 886 consensus_4672#1 CGCCACCGCACC---ACCACCACCACCATCACCATCATCACCAGCATCATCACCCTCACA 519 ************ ************** ****************************** consensus_4672#0 GTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAG------AACA 940 consensus_4672#1 GTCACCATCAGCTGCATCACAACGGAACCAGCCATCCTCAGCAGCAGCAGCAGCAGAACA 579 ************************************************** **** consensus_4672#0 ACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAGTCCGGAAACAGGCTACT 1000 consensus_4672#1 ACAGTAGCAGTAATCACCATCACCAGCAGAACGGCGGCAGCAG----------------- 622 ******************************************* consensus_4672#0 CCG 1003 consensus_4672#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||