These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGT-GGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACC-GTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGCGCCGTGT] [+] EMBL BM657455 [CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGT GGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACC GTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGCGCCGTGT] [+] EMBL BM651631 [ TCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGATGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGGTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAA ] consensusID : consensus_4676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACA] [+] EMBL BM636047 [CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGATTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACGCGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGACGCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAACGACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCGAACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGATGACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAACAATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGTGGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGGTACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATCCAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4676#0 CCGCCCACGCGTCCGTTCGCTTGCAAAAAGTGAGAAGTGTGTCCGTAACGTGGTGCAGGA 60 consensus_4676#1 -----------------------CCGCGGACGCGTGGGGTGTCCGTAACGTGGTGCAGGA 37 * * * * ********************** consensus_4676#0 TTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACG 120 consensus_4676#1 TTTGTTAAATTTCGTTCTTGTTTTCCGTTCTAATCGTTGTTAACCATGCCTAAAAACACG 97 ************************************************************ consensus_4676#0 CGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGAC 180 consensus_4676#1 CGCAATGGCAACTTTCGTGGCCGCGGCGGTCGCAACTACGGGGGAGACCGGTTTTACGAC 157 ************************************************************ consensus_4676#0 GCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAAC 240 consensus_4676#1 GCCAATGCACCAAAACATGACCACGACGATCGAACGGACCGTAGCGGCGGCGAGTGGAAC 217 ************************************************************ consensus_4676#0 GACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCG 300 consensus_4676#1 GACCGGAACAGAAACGATCGCATGACGGACGTGAAGCGGCGGGTCAGCTTCAAACCATCG 277 ************************************************************ consensus_4676#0 AACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGAT 360 consensus_4676#1 AACGGTGGCCGTGGCAAGGGGCGCATCACAGAGAACCACCTGCGGGCGCACATGAACGAT 337 ************************************************************ consensus_4676#0 GACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAAC 420 consensus_4676#1 GACGATGAGGCGATGGGTGGCGACATGTTCGACGGGGGCGATCTTCGCGTGCGCATGAAC 397 ************************************************************ consensus_4676#0 AATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGT 480 consensus_4676#1 AATCGCAACTTTGATCGGCAGCGGCGCAGCGGCTCACCGATTCCGCGCGGCGTACCGCGT 457 ************************************************************ consensus_4676#0 GGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGG 540 consensus_4676#1 GGTGGCGGTGGTGGTGGTGGCGGCAATCAGCGCAAAAAGTTGCTCCCGAACGCACCGTGG 517 ************************************************************ consensus_4676#0 TACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATC 600 consensus_4676#1 TACGAAGTGCGGATACCATACGGCAACAAGTACGAGAAGGAGTTTATTCTTCGCTCGATC 577 ************************************************************ consensus_4676#0 CAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACAAGGCGAACGAGTCGGGC 660 consensus_4676#1 CAGCAAGCAATCACGCCGCAGATGTTCATACCGCTGTACTACA----------------- 620 ******************************************* consensus_4676#0 GCCGTGT 667 consensus_4676#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||