These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCGTAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGAAAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTGCCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAAGCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGTCTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAGTACCCGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA] [+] EMBL BM585892 [CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCGTAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGAAAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTGCCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAAGCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGTCTCACTAAGAACGGCCGAAAGCAGCGTT ] [+] EMBL BM607299 [ ccgcggacgCGTGGGTTGCGCTCAGCGTAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGAAAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTGCCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGT GGTTCATCTGAGAAGCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGTCTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAGTACCCGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA] consensusID : consensus_4682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATGTGTCAGAAAAGGAAGGCAAGCTATCAAACATTACTACTGTCAGGCGATGCAAGAAGAAGAACCTTCGTTACAGACGGTTCCGCGTTGGTGCCGCGCCTGTTCNATCCCGCTCTTCGGAGGAAAAAAAACTAAAGAAAAAAGGAACTCCCCTGGGTGGGTCCCCTGGGGAANCCTTGCGGAACGGGGACGGGGCTGCGNCCTGCGGACCTGGGGGGNGGGGGTCGGCCGA] [+] EMBL AL930379 [CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATGTGTCAGAAAAGGAAGGCAAGCTATCAAACATTACTACTGTCAGGCGATGCAAGAAGAAGAACCTTCGTTACAGACGGTTCCGCGTTGGTGCCGCGCCTGTTCNATCCCGCTCTTCGGAGGAAAAAAAACTAAAGAAAAAAGGAACTCCCCTGGGTGGGTCCCCTGGGGAANCCTTGCGGAACGGGGACGGGGCTGCGNCCTGCGGACCTGGGGGGNGGGGGTCGGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4682#0 CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCG 60 consensus_4682#1 ------------------------------------------------------------ consensus_4682#0 TAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGA 120 consensus_4682#1 ------------------------------------------------------------ consensus_4682#0 AAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTG 180 consensus_4682#1 ------------------------------------------------------------ consensus_4682#0 CCACTATTTACAAACAAGATGGACAAG-CATACTGCTTG-TGTAGATCTTCCGATTCTTC 238 consensus_4682#1 -------CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTC 53 * * ** * ***** * ********* ******************** consensus_4682#0 GCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGG-AGATTGTATTAATG 297 consensus_4682#1 GCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATG 113 ********************************************* ************* consensus_4682#0 TGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAG-CGATGCAAAGAAGAA 356 consensus_4682#1 TGTCAGAAAAGGAAGGCAAGC-TATCAAACATTACTACTGTCAGGCGATGCAA-GAAGAA 171 *************** ***** ********************** ******** ****** consensus_4682#0 GACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCG 416 consensus_4682#1 GAACCTTCGTTACAGACGGTTCCGCG-TTGGTGCC-GCGCCTG-TTCNATCCCGCTCTTC 228 ** ************** *** ** ***** ** ******* * * ******** consensus_4682#0 GAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAA 476 consensus_4682#1 GGAGGAAAAAAAACTAAAGAAAAAAGGAA-----CTCCCCTGGGTGGGTCCCCTGGGGAA 283 * * ******* ***** * **** *** ***** * ******* * * *** consensus_4682#0 GCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTT 536 consensus_4682#1 NCCTTGCGG-AACGGGGACGGGGCTGCGNCCTGCGGACCTGGGGG--GNGGGGGTCGGCC 340 * ****** * * * ***** ** *** * * *** * consensus_4682#0 GGGTCTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAG 596 consensus_4682#1 GA---------------------------------------------------------- 342 * consensus_4682#0 TACCCGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA 645 consensus_4682#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||