cluster # 4683

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4683 cluster # 4683 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4683#0 length = 733 sequences # 1

consensus_4683#1 length = 685 sequences # 2

consensusID : consensus_4683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence

                              [CCGCCCACACGTCCGATAAGAACCGTGATCGATAGACTGTGCGTGTGGTACTGGCTACAGTGTGTGCTGCCCCTGCTGTGTCCTCGGGCAACCTTTGGCGGGCCCCGTGTCCCGACGTGAACCCCCCGTCCACCATCGTACCCCCAATCGACCCCGAACATGCGAACGATCATCACACACTTCCCCTCACAATCGGATTACACACAAGACTACGCTCGGCCTTGAGCAACGCGAAAGCAACAAATGATCGCGCAACTGCTTGGCGTTTCTAGATATAAGAGTGTGTGTGTGTGTGTTCTCGACGGAACAATTACGAGCGGATTTCTGGTGCAAGCGAGTTAAGAGCGAGCACCGTCCACAAGCCTGTCCCAAACGCTCAGCCGCGGGAACAAGGTAAGGAACGGGATGGGATACCTGCTCGCATTGCTAAATGACATCAACAGTACCGAGACGGACATGGATTTTTGCCAAGATTTCATTCGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCTACCGGATCGTCTTTCACACCGGAATTGACCCGGACATCATCCAGGTGGTCGCCCGGCTGCTCAAGTATCTGCGCGTCCACAACTATCTCAACGAGGACAACCAGGTGAACGCGCAGTACGAGCCGGAGCTGCTGCGGATCATGATGTACCTGCTGCTCAACTCGGACGTCAACTTCCGGTACGATCTCCAGCAGGACGCTCGCG]

[+] EMBL BM617932             [CCGCCCACACGTCCGATAAGAACCGTGATCGATAGACTGTGCGTGTGGTACTGGCTACAGTGTGTGCTGCCCCTGCTGTGTCCTCGGGCAACCTTTGGCGGGCCCCGTGTCCCGACGTGAACCCCCCGTCCACCATCGTACCCCCAATCGACCCCGAACATGCGAACGATCATCACACACTTCCCCTCACAATCGGATTACACACAAGACTACGCTCGGCCTTGAGCAACGCGAAAGCAACAAATGATCGCGCAACTGCTTGGCGTTTCTAGATATAAGAGTGTGTGTGTGTGTGTTCTCGACGGAACAATTACGAGCGGATTTCTGGTGCAAGCGAGTTAAGAGCGAGCACCGTCCACAAGCCTGTCCCAAACGCTCAGCCGCGGGAACAAGGTAAGGAACGGGATGGGATACCTGCTCGCATTGCTAAATGACATCAACAGTACCGAGACGGACATGGATTTTTGCCAAGATTTCATTCGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCTACCGGATCGTCTTTCACACCGGAATTGACCCGGACATCATCCAGGTGGTCGCCCGGCTGCTCAAGTATCTGCGCGTCCACAACTATCTCAACGAGGACAACCAGGTGAACGCGCAGTACGAGCCGGAGCTGCTGCGGATCATGATGTACCTGCTGCTCAACTCGGACGTCAACTTCCGGTACGATCTCCAGCAGGACGCTCGCG]




>consensus_4683#0
CCGCCCACACGTCCGATAAGAACCGTGATCGATAGACTGTGCGTGTGGTACTGGCTACAG
TGTGTGCTGCCCCTGCTGTGTCCTCGGGCAACCTTTGGCGGGCCCCGTGTCCCGACGTGA
ACCCCCCGTCCACCATCGTACCCCCAATCGACCCCGAACATGCGAACGATCATCACACAC
TTCCCCTCACAATCGGATTACACACAAGACTACGCTCGGCCTTGAGCAACGCGAAAGCAA
CAAATGATCGCGCAACTGCTTGGCGTTTCTAGATATAAGAGTGTGTGTGTGTGTGTTCTC
GACGGAACAATTACGAGCGGATTTCTGGTGCAAGCGAGTTAAGAGCGAGCACCGTCCACA
AGCCTGTCCCAAACGCTCAGCCGCGGGAACAAGGTAAGGAACGGGATGGGATACCTGCTC
GCATTGCTAAATGACATCAACAGTACCGAGACGGACATGGATTTTTGCCAAGATTTCATT
CGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCTACCGGATCGTC
TTTCACACCGGAATTGACCCGGACATCATCCAGGTGGTCGCCCGGCTGCTCAAGTATCTG
CGCGTCCACAACTATCTCAACGAGGACAACCAGGTGAACGCGCAGTACGAGCCGGAGCTG
CTGCGGATCATGATGTACCTGCTGCTCAACTCGGACGTCAACTTCCGGTACGATCTCCAG
CAGGACGCTCGCG

consensusID : consensus_4683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence

                              [CCGGTGACAAAAGAACCGGCATCGATAGACTGTGCGTGTGGTACTGGCGAAAGTGTGTGCTGCCCCTGCTGTGTCCACGGCCAACCTTTGGCGGGCCCCGTGTCAGGACGTGAACCCCCCGTCCAGCAGCGTAGCCCCAATCAACCCCGAAGAGGCGAACGACCATCAAACACTTCCCCACACAGTCGGCTTACAGAGAAGACAACGCTCGGCCTTGAGCAACGCGAAAGCAAAAAAAAAGCGCGCAACTGCTTGGCGTTTCGAGATAGAAGAGTGTGTGTGTGTGTGTTCTCGACGGAACGAAAACAAGCGGATTTCTGGTGCGAGCGAGTTAAGAGCGAGCACCGTCGACAAGCCGGTCCGAAACGCTCGGCCGCGGGAAGAAGGGAAGGAACGGCATGGGAGACCTGCTCGCATTGCTAAATGAGATCAACAGTACCGAGACGGACATGGAGTTTTGCGAAGATTTCAACCGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCGACCGGATCGTCTTTCACAGCGGAAATGAGCCGTACATCATCGAGGTGGTCGCCCGGCTGCTCAAGTATCTGCGCGTCCAGAACTATCTCAACGAGGAGAACAAGGTGAACGCGCAGTACGAGCCGGAGCTGCGCCGGATCACGATGTACCTGCTGCTCAACAC]

[+] EMBL BM584788             [CCGGTGACAAAAGAACCGGCATCGATAGACTGTGCGTGTGGTACTGGCGAAAGTGTGTGCTGCCCCTGCTGTGTCCACGGCCAACCTTTGGCGGGCCCCGTGTCAGGACGTGAACCCCCCGTCCAGCAGCGTAGCCCCAATCAACCCCGAAGAGGCGAACGACCATCAAACACTTCCCCACACAGTCGGCTTACAGAGAAGACAACGCTCGGCCTTGAGCAACGCGAAAGCAAAAAAAAAGCGCGCAACTGCTTGGCGTTTCGAGATAGAAGAGTGTGTGTGTGTGTGTTCTCGACGGAACGAAAACAAGCGGATTTCTGGTGCGAGCGAGTTAAGAGCGAGCACCGTCGACAAGCCGGTCCGAAACGCTCGGCCGCGGGAAGAAGGGAAGGAACGGCATGGGAGACCTGCTCGCATTGCTAAATGAGATCAACAGTACCGAGACGGACATGGAGTTTTGCGAAGATTTCAACCGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCGACCGGATCGTCTTTCACAGCGGAAATGAGCCGTACATCATCGAGGTGGTCGCCCGGCTGCTCAAGTATCTGCGCGTCCAGAACTATCTCAACGAGGAGAACAAGGTGAACGCGCAGTACGAGCCGGAGCTGCGCCGGATCACGATGTACCTGCTGCTCAACAC]
[+] EMBL BM579776             [CCGGTGACAAAAGAACCGGCATCGATAGACTGTGCGTGTGGTACTGGCGAAAGTGTGTGCTGCCCCTGCTGTGTCCACGGCCAACCTTTGGCGGGCCCCGTGTCAGGACGTGAACCCCCCGTCCAGCAGTGTAGCCCCAATCAACCCCGAAGAGGCGAACGACCATCAAACACTTCCCCACACAGTCGGCTTACAGAGAAGACAACGCTCGGCCTTGAGCAACGCGAAAGCAAAAAAAAAGCGCGCAACTGCTTGGCGTTTCGAGATAGAAGAGTGTGTGTGTGTGTGTTCTCGACGGAACGAAAACAAGCGGATTTCTGGTGCGAGCGAGTTAAGAGCGAGCACCGTCGACAAGCCGGTCCGAAACGCTCGGCCGCGGGAAGAAGGGAAGGAACGGCATGGGAGACCTGCTCGCATTGCTAAATGAGATCAACAGTACCGGTACGtgcggacgg                                                                                                                                                                                                                                      ]




>consensus_4683#1
CCGGTGACAAAAGAACCGGCATCGATAGACTGTGCGTGTGGTACTGGCGAAAGTGTGTGC
TGCCCCTGCTGTGTCCACGGCCAACCTTTGGCGGGCCCCGTGTCAGGACGTGAACCCCCC
GTCCAGCAGCGTAGCCCCAATCAACCCCGAAGAGGCGAACGACCATCAAACACTTCCCCA
CACAGTCGGCTTACAGAGAAGACAACGCTCGGCCTTGAGCAACGCGAAAGCAAAAAAAAA
GCGCGCAACTGCTTGGCGTTTCGAGATAGAAGAGTGTGTGTGTGTGTGTTCTCGACGGAA
CGAAAACAAGCGGATTTCTGGTGCGAGCGAGTTAAGAGCGAGCACCGTCGACAAGCCGGT
CCGAAACGCTCGGCCGCGGGAAGAAGGGAAGGAACGGCATGGGAGACCTGCTCGCATTGC
TAAATGAGATCAACAGTACCGAGACGGACATGGAGTTTTGCGAAGATTTCAACCGGCTGC
AGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCGACCGGATCGTCTTTCACA
GCGGAAATGAGCCGTACATCATCGAGGTGGTCGCCCGGCTGCTCAAGTATCTGCGCGTCC
AGAACTATCTCAACGAGGAGAACAAGGTGAACGCGCAGTACGAGCCGGAGCTGCGCCGGA
TCACGATGTACCTGCTGCTCAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4683#0      CCGCCCACACGTCCGATAAGAACCGTGATCGATAGACTGTGCGTGTGGTACTGGCTACAG 60
consensus_4683#1      -------CCGGTGACAAAAGAACCGGCATCGATAGACTGTGCGTGTGGTACTGGCGAAAG 53
                             *  **   * ********  **************************** * **

consensus_4683#0      TGTGTGCTGCCCCTGCTGTGTCCTCGGGCAACCTTTGGCGGGCCCCGTGTCCCGACGTGA 120
consensus_4683#1      TGTGTGCTGCCCCTGCTGTGTCCACGGCCAACCTTTGGCGGGCCCCGTGTCAGGACGTGA 113
                      *********************** *** ***********************  *******

consensus_4683#0      ACCCCCCGTCCACCATCGTACCCCCAATCGACCCCGAACATGCGAACGATCATCACACAC 180
consensus_4683#1      ACCCCCCGTCCAGCAGCGTAGCCCCAATCAACCCCGAAGAGGCGAACGACCATCAAACAC 173
                      ************ ** **** ******** ******** * ******** ***** ****

consensus_4683#0      TTCCCCTCACAATCGGATTACACACAAGACTACGCTCGGCCTTGAGCAACGCGAAAGCAA 240
consensus_4683#1      TTCCCCACACAGTCGGCTTACAGAGAAGACAACGCTCGGCCTTGAGCAACGCGAAAGCAA 233
                      ****** **** **** ***** * ***** *****************************

consensus_4683#0      CAAATGATCGCGCAACTGCTTGGCGTTTCTAGATATAAGAGTGTGTGTGTGTGTGTTCTC 300
consensus_4683#1      AAAAAAAGCGCGCAACTGCTTGGCGTTTCGAGATAGAAGAGTGTGTGTGTGTGTGTTCTC 293
                       ***  * ********************* ***** ************************

consensus_4683#0      GACGGAACAATTACGAGCGGATTTCTGGTGCAAGCGAGTTAAGAGCGAGCACCGTCCACA 360
consensus_4683#1      GACGGAACGAAAACAAGCGGATTTCTGGTGCGAGCGAGTTAAGAGCGAGCACCGTCGACA 353
                      ******** *  ** **************** ************************ ***

consensus_4683#0      AGCCTGTCCCAAACGCTCAGCCGCGGGAACAAGGTAAGGAACGGGATGGGATACCTGCTC 420
consensus_4683#1      AGCCGGTCCGAAACGCTCGGCCGCGGGAAGAAGGGAAGGAACGGCATGGGAGACCTGCTC 413
                      **** **** ******** ********** **** ********* ****** ********

consensus_4683#0      GCATTGCTAAATGACATCAACAGTACCGAGACGGACATGGATTTTTGCCAAGATTTCATT 480
consensus_4683#1      GCATTGCTAAATGAGATCAACAGTACCGAGACGGACATGGAGTTTTGCGAAGATTTCAAC 473
                      ************** ************************** ****** *********  

consensus_4683#0      CGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCTACCGGATCGTC 540
consensus_4683#1      CGGCTGCAGCTTATCCTGAACAACACCAACCAGTTCGTCCGCTCGTTCGACCGGATCGTC 533
                      ************************************************ ***********

consensus_4683#0      TTTCACACCGGAATTGACCCGGACATCATCCAGGTGGTCGCCCGGCTGCTCAAGTATCTG 600
consensus_4683#1      TTTCACAGCGGAAATGAGCCGTACATCATCGAGGTGGTCGCCCGGCTGCTCAAGTATCTG 593
                      ******* ***** *** *** ******** *****************************

consensus_4683#0      CGCGTCCACAACTATCTCAACGAGGACAACCAGGTGAACGCGCAGTACGAGCCGGAGCTG 660
consensus_4683#1      CGCGTCCAGAACTATCTCAACGAGGAGAACAAGGTGAACGCGCAGTACGAGCCGGAGCTG 653
                      ******** ***************** *** *****************************

consensus_4683#0      CTGCGGATCATGATGTACCTGCTGCTCAACTCGGACGTCAACTTCCGGTACGATCTCCAG 720
consensus_4683#1      CGCCGGATCACGATGTACCTGCTGCTCAACAC---------------------------- 685
                      *  ******* ******************* *                            

consensus_4683#0      CAGGACGCTCGCG 733
consensus_4683#1      -------------