These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence [TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAAAGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAAGAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGTAGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAACATTGTTTTTGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAAATGGAATGGCATGAAGGTGAACCGAC] [+] EMBL BX603332 [TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAAAGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAAGAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGTAGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTG ] [+] EMBL BX611190 [ AAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAAGAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGTAGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAACATTGTTTTTGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAAATGGAATGGCATGAAGGTGAACCGAC] consensusID : consensus_4696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [GGCAGAATCGGCACGATGGTGTTGTAGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGCATTGTTTCTTCGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAAGAGAACATGGAATGGCATGAAGGTGAACCGACGATCGCACAATACCGATAGAGAGGGCGGCAGGAAAATGCATATACGGTGTGATCACATCGTTAATATAGAGTG] [+] EMBL BX469853 [GGCAGAATCGGCACGATGGTGTTGTAGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGCATTGTTTCTTCGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAAGAGAACATGGAATGGCATGAAGGTGAACCGACGATCGCACAATACCGATAGAGAGGGCGGCAGGAAAATGCATATACGGTGTGATCACATCGTTAATATAGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4696#0 TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAA 60 consensus_4696#1 ------------------------------------------------------------ consensus_4696#0 AGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAG 120 consensus_4696#1 ------------------------------------------------------------ consensus_4696#0 CAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAA 180 consensus_4696#1 ------------------------------------------------------------ consensus_4696#0 GAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGT 240 consensus_4696#1 --------------------------------GGCAGAATCGGC---ACGATGGTGTTGT 25 * * * * ** *** * **** consensus_4696#0 AGTTAGGTTTAGCAA-TCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCT 299 consensus_4696#1 AGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCT 85 *************** ******************************************** consensus_4696#0 TGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTA 359 consensus_4696#1 TGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTA 145 ************************************************************ consensus_4696#0 TGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGA 419 consensus_4696#1 TGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGA 205 ************************************************************ consensus_4696#0 TTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTC 479 consensus_4696#1 TTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTC 265 ************************************************************ consensus_4696#0 TGTTGCCACTTTGATTTTAAGGGACAGTTTTAA-CATTGTTTTT--GGTGGTGTAAGCGA 536 consensus_4696#1 TGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGCATTGTTTCTTCGGTGGTGTAAGCGA 325 ********************************* ******** * ************** consensus_4696#0 CGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACT 596 consensus_4696#1 CGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACT 385 ************************************************************ consensus_4696#0 GCTTCTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAA-ATGGAATGGCATGAAGGTG 655 consensus_4696#1 GCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAAGAGAACATGGAATGGCATGAAGGTG 445 **************************** ********** ******************* consensus_4696#0 AACCGAC----------------------------------------------------- 662 consensus_4696#1 AACCGACGATCGCACAATACCGATAGAGAGGGCGGCAGGAAAATGCATATACGGTGTGAT 505 ******* consensus_4696#0 -------------------- consensus_4696#1 CACATCGTTAATATAGAGTG 525 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||