cluster # 4697

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4697 cluster # 4697 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4697#0 length = 1035 sequences # 2

consensus_4697#1 length = 512 sequences # 1

consensusID : consensus_4697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1035
fasta sequence

                              [CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCTAGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACGCTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTAAGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATAAAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACAGTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAAGAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTGGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATCACATGGTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATTAAGATATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCTGCTACAATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCCCGATGGGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGTAAAAAAGAAGCATCGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTACTCAAAAGAATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCCAATCTGAGAGACACAAATTAAA]

[+] EMBL BM586614             [CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCTAGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACGCTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTAAGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATAAAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACAGTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAAGAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX603447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTGGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATCACATGGTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATTAAGATATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCTGCTACAATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCCCGATGGGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGTAAAAAAGAAGCATCGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTACTCAAAAGAATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCCAATCTGAGAGACACAAATTAAA]




>consensus_4697#0
CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCT
AGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACG
CTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTA
AGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATA
AAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACA
GTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAA
GAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGG
AAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGG
GGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAG
CGTGTTTTTTTTGGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATGAACAC
AGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATCACATG
GTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATTAAGAT
ATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCTGCTAC
AATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCCCGATG
GGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGTAAAAA
AGAAGCATCGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTACTCAAAAG
AATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCCAATCTGA
GAGACACAAATTAAA

consensusID : consensus_4697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [NCTACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCAGTGTTTGTAGTACAACAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCNATCACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCACAATTANGATATTNATAGATNGATTGTATNATAGGCAAGCGCAAGCGAGTAACACACAAGCTGCTANNATATGTGGCGCAAACGAGGCAANCAGATACGANATTGGCCCAGATCTCCGATGGTGTGATATAAGCNCGTGTCGCGCTGTCTCGCCGGAGAGTAAAAGAAGTNACATATGACCCGTCCGATCTCCTCC]

[+] EMBL BX619296             [NCTACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCAGTGTTTGTAGTACAACAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCNATCACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCACAATTANGATATTNATAGATNGATTGTATNATAGGCAAGCGCAAGCGAGTAACACACAAGCTGCTANNATATGTGGCGCAAACGAGGCAANCAGATACGANATTGGCCCAGATCTCCGATGGTGTGATATAAGCNCGTGTCGCGCTGTCTCGCCGGAGAGTAAAAGAAGTNACATATGACCCGTCCGATCTCCTCC]




>consensus_4697#1
NCTACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGAC
GATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGG
TACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCA
GTGTTTGTAGTACAACAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCC
AAACTGGCGCGGAAATGCNATCACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCT
GAGAGGCACCGATTCACAATTANGATATTNATAGATNGATTGTATNATAGGCAAGCGCAA
GCGAGTAACACACAAGCTGCTANNATATGTGGCGCAAACGAGGCAANCAGATACGANATT
GGCCCAGATCTCCGATGGTGTGATATAAGCNCGTGTCGCGCTGTCTCGCCGGAGAGTAAA
AGAAGTNACATATGACCCGTCCGATCTCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4697#0      CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCT 60
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      AGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACG 120
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      CTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTA 180
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      AGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATA 240
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      AAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACA 300
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      GTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAA 360
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      GAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGG 420
consensus_4697#1      --------------------------------------NCTACATAGAAAGGGGAAAGGG 22
                                                               *******************

consensus_4697#0      AAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGG 480
consensus_4697#1      AAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGG 82
                      ************************************************************

consensus_4697#0      GGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAG 540
consensus_4697#1      GGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAG 142
                      ************************************************************

consensus_4697#0      CGTGTTTTTTTT-----GGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATG 595
consensus_4697#1      CGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCAGTGTTTGTAGTACAACAGTATG 202
                      ************     ******************* *************** *******

consensus_4697#0      AACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATC 655
consensus_4697#1      AACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCNATC 262
                      ******************************************************** ***

consensus_4697#0      ACATGGTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATT 715
consensus_4697#1      ACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCA-CAATT 321
                      *************** ************************************** *****

consensus_4697#0      AAGATATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCT 775
consensus_4697#1      ANGATATTNATAGATNGATTGTATNATAGGCAAGCG-CAAGCG-AGTAA-CACACAAGCT 378
                      * ****** ****** ******** *********** ****** ***** **********

consensus_4697#0      GCTACAATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCC 835
consensus_4697#1      GCTANNAT-ATGTGGCGCAAA--CGAGGCAANCAGATACGANATTGGCCC-AGATCT--C 432
                      ****  ** ************    ****** ********* *** **** ****    *

consensus_4697#0      CGATGGGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGT 895
consensus_4697#1      CGATGGT--GTGATATAAGCNCGTGT-----------CGCGC-TGTCTCGCCG-GAGAGT 477
                      ******   *********   ** **           ** ** **   *** * ******

consensus_4697#0      AAAA-AAGAAGCAT-CGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTAC 953
consensus_4697#1      AAAAGAAGTNACATATGACCCGTCCGATCTCCTCC------------------------- 512
                      **** ***   ***  ** *  *   *   **  *                         

consensus_4697#0      TCAAAAGAATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCC 1013
consensus_4697#1      ------------------------------------------------------------
                                                                                  

consensus_4697#0      AATCTGAGAGACACAAATTAAA 1035
consensus_4697#1      ----------------------