These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCACCAGCACCACCAGCAGCACCAGCAGCAGCAGCACAGCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTCGTGCGTGTGTCTGTGTGTTGGTGTGAGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGTGCCGCCACCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCTGATTTGTGGCGTATGTGGGTGTGTGTGTGTGTGTATGTGTGTGGAAAACATCACTCGCTAAAGTCATTCCCTTTCGGAAGGCATCAAAACACACGGGTCGGCAGTGTTTGTAATTGAGTTTAGTGAAGCAGGCAAATCGGTGGTGTCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCGTGTAGCAAATTTGTGTGGCCTGCGTTTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCTTTTCAGGCGCACAATCCG] [+] EMBL BM644918 [CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCACCAGCACCACCAGCAGCACCAGCAGCAGCAGCACAGCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTCGTGCGTGTGTCTGTGTGTTGGTGTGAGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGTGCCGCCACCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCTGATTTGTGGCGTATGTGGGTGTGTGTGTGTGTGTATGTGTGTGGAAAACATCACTCGCTAAAGTCATTCCCTTTCGGAAGGCATCAAAACACACGGGTCGGCAGTGTTTGTAATTGAGTTTAGTGAAGCAGGCAAATCGGTGGTGTCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCGTGTAGCAAATTTGTGTGGCCTGCGTTTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCTTTTCAGGCGCACAATCCG] consensusID : consensus_4701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCCAGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCACGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTGTTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTATCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCATATTCGTGTCCAAAGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTGCGTGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGT] [+] EMBL BM577680 [CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCCAGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCACGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTGTTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTATCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCATATTCGTGTCCAAAGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTGCGTGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGT] [+] EMBL BM654719 [ ccgCACAGTCCCAGGTCGTTTGCTTCTCCAGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCACGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTGTTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTATCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGGTGGTTTAGTACCATATTtcg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4701#0 ------------------------------------------------------------ consensus_4701#1 CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCC 60 consensus_4701#0 ------------------------------------------------------------ consensus_4701#1 AGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCA 120 consensus_4701#0 ------------------------------------------------------------ consensus_4701#1 CGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTG 180 consensus_4701#0 ------------------------------------------------------------ consensus_4701#1 TTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTA 240 consensus_4701#0 --------------------CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCA-CCA 39 consensus_4701#1 TCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCA-TATTCGTGTCCA 299 *** * * **** * ** *** *** consensus_4701#0 GCACCACCAGCAGCACCAGCAGCAGCAGCACAG----CAGCAGCAGCAGTAATATCAACG 95 consensus_4701#1 AAGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACG 359 * * * * * * ** * * ** *********************** consensus_4701#0 CCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTC 155 consensus_4701#1 CCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGT-- 417 ********************************************************** consensus_4701#0 GTGCGTGTGTCTGTGTGTTGGTGTGAGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTA 215 consensus_4701#1 --GCGTGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTA 475 ***** ******************** ******************************* consensus_4701#0 CGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCA 275 consensus_4701#1 CGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCA 535 ************************************************************ consensus_4701#0 TCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACG 335 consensus_4701#1 TCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACG 595 ************************************************************ consensus_4701#0 TGCTGCTGCTGCTCCTGTGCCGCCACCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCT 395 consensus_4701#1 TGCTGCTGCTGCTCCTGT------------------------------------------ 613 ****************** consensus_4701#0 GATTTGTGGCGTATGTGGGTGTGTGTGTGTGTGTATGTGTGTGGAAAACATCACTCGCTA 455 consensus_4701#1 ------------------------------------------------------------ consensus_4701#0 AAGTCATTCCCTTTCGGAAGGCATCAAAACACACGGGTCGGCAGTGTTTGTAATTGAGTT 515 consensus_4701#1 ------------------------------------------------------------ consensus_4701#0 TAGTGAAGCAGGCAAATCGGTGGTGTCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCG 575 consensus_4701#1 ------------------------------------------------------------ consensus_4701#0 TGTAGCAAATTTGTGTGGCCTGCGTTTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCT 635 consensus_4701#1 ------------------------------------------------------------ consensus_4701#0 TTTCAGGCGCACAATCCG 653 consensus_4701#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||