These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4704#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAACAGTGTGTTTTTATTCTTTAAACTGTGTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGCTGTAGTTCAATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTCTAGGAGGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTAAGGGTGTCGTCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGAGTCCCAGCAAGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTACAGTCGGATGTAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG] [+] EMBL BX468980 [GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAACAGTGTGTTTTTATTCTTTAAACTGTGTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGCTGTAGTTCAATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTCTAGGAGGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTAAGGGTGTCGTCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGAGTCCCAGCAAGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTACAGTCGGATGTAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG] consensusID : consensus_4704#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAATCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAAGTGTGTTTTATTCCTAAAACTGTGTTTAGTGTTTCAAGTTAGGCTGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTATATTTGTTGCTGTGCTGTACACGCAACTGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAAAAGCAACACCCTCGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCGGCTCCACTGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTTAGGAGTTGTTTTTACAGTGTTTCCTGGCGCGGCGTTGGAGCATGGTTTAAGGGTGTCGTCTTCCTCGGTTGAAGAAACCCTTTCAACATCCCAACAACAGCAGTCCCAGCAGGTCAAAGGCAGCACACCGTTGCGCGAGCCAGGTGCAGCAGTAATTGATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC] [+] EMBL BM576308 [CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAATCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAAGTGTGTTTTATTCCTAAAACTGTGTTTAGTGTTTCAAGTTAGGCTGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTATATTTGTTGCTGTGCTGTACACGCAACTGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAAAAGCAACACCCTCGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCGGCTCCACTGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTTAGGAGTTGTTTTTACAGTGTTTCCTGGCGCGGCGTTGGAGCATGGTTTAAGGGTGTCGTCTTCCTCGGTTGAAGAAACCCTTTCAACATCCCAACAACAGCAGTCCCAGCAGGTCAAAGGCAGCACACCGTTGCGCGAGCCAGGTGCAGCAGTAATTGATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC] consensusID : consensus_4704#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [ATATTGTGTTTAAACAAGGTGNTGTCTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATATTTGTTGCTGGGCCCTTTTGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACTATCTCGTAAATACGCTGAANGTGAAGAANAAAGCAACACCCTTCCNGGCACNCTTGGCTGGTGGTAATGTAGTACGGTGGAAAGTGTATCCAG] [+] EMBL AL933298 [ATATTGTGTTTAAACAAGGTGNTGTCTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATATTTGTTGCTGGGCCCTTTTGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACTATCTCGTAAATACGCTGAANGTGAAGAANAAAGCAACACCCTTCCNGGCACNCTTGGCTGGTGGTAATGTAGTACGGTGGAAAGTGTATCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4704#0 GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCG 60 consensus_4704#1 --------CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAA-TCTCATCTCCGTCGTCG 51 consensus_4704#2 ------------------------------------------------------------ consensus_4704#0 TACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAC------AGTGT 114 consensus_4704#1 TACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAA-------AGTGT 104 consensus_4704#2 -----------------------------------ATATTGTGTTTAAACAAGGTGNTGT 25 ************* *** consensus_4704#0 GTTTTTATTCTTTAAACTGTG--TTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTT 172 consensus_4704#1 GTTTT-ATTCCTAAAACTGTG--TTTAGTGTTTCAAGTTAGGCT------------GGTT 149 consensus_4704#2 CTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTT 85 * * **** * ****** ****************** ** **** consensus_4704#0 AGGCGCTCCTTCAA-TTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGC 231 consensus_4704#1 AGGCGCTCCTTCAA-TTGTTGGTGTGTGT--ATATTTGTT-GCTGTGCTGTACACGCAAC 205 consensus_4704#2 AGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATATTTGTT-GCTGGGCCCTT-------T 137 ************** ************** ******** **** ** * consensus_4704#0 TGTAGTTCAATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATG 291 consensus_4704#1 TGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAAAAGCAACACCCTCG-TGTGTGTATG 264 consensus_4704#2 TGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACTATCTCG-----TAAATA 192 ** * * * * ** * * ** * * **** **** * ** consensus_4704#0 TGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTAC 351 consensus_4704#1 TGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCGGCTCCACTGG-CTTAC 323 consensus_4704#2 CGCTG----AANGTGAAGAANAAAGCAACACCCTTCCNGGCACN-CTTGGCTGGTGGTAA 247 * ** ** *** * * * ** * ** **** ** consensus_4704#0 CAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACG 411 consensus_4704#1 CAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACG 383 consensus_4704#2 TGTAG-TACGGTG-GAAAGTGTATCCAG-------------------------------- 273 ** * ** * * **** * consensus_4704#0 TTTCTAGGAGGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTA 471 consensus_4704#1 TTT-TAGGAGTT-----GTTTTTACAG-TGTTTCCTGGCGCGGCGTTGGAGCATGGTTTA 436 consensus_4704#2 ------------------------------------------------------------ consensus_4704#0 AGGGTGTCGTCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGA 531 consensus_4704#1 AGGGTGTCGTC-TTCCTCGGTTGAAGAAACCCTTTCAACATCCCAACAACAGC------A 489 consensus_4704#2 ------------------------------------------------------------ consensus_4704#0 GTCCCAGCAAGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTAC 591 consensus_4704#1 GTCCCAGCA-GGTCAA--AGGCAGCACACCGTTGCGCGAGCCAGGTGCA-GCAGTAATTG 545 consensus_4704#2 ------------------------------------------------------------ consensus_4704#0 AGTCGGATGTAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG--- 640 consensus_4704#1 ATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC 597 consensus_4704#2 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||