cluster # 4719

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Anopheles gambiae
cluster # 4719 cluster # 4719 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4719#0 length = 944 sequences # 2

consensus_4719#1 length = 354 sequences # 1

consensusID : consensus_4719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 944
fasta sequence

                              [CCGAGGGGGTGGTATATTCTAGGCATAGTAATGTTGTTCCGTTGCGTTCGGTTACATGTTCATACAGCCGGTAGGGTACGGATTAACAAAAAAAAAACATTGCACTAGTGTGTTAAGCGGTGTGCAACCATTCCCAGAAGCAACGTAACGTTCGGTTTTAGTTTAGTTACCTCTTACTCCTCGTACACGTGATACACGATCAACCCAATCCTCCGTAGTTAGTTTGTTGTACAAAAGCAAAAGAAACGTATGTATGTGTGTGTGTGTGTGCGTGCGTGTCTGTGAAACTATTTTGAAACGAACTCAGCAAAACGCGGGAACGAATTATACAACCAAACTTAGACAGACGGACAGACCGATAGAGGCAGCCTAAACATTAGAATAGGAATATGAACCAAATATATTATACACGATGGTGGTTGGCATTGGGAGAAGCGTACGGGAAGAATAGATAGGTTGCGCGTGGTGGTGCTCTGCCCC-CCTCCCCCTCCCAAACTCCGTCGCACGCGATGTTGTTCATTTCGTTTCCTTTCTCAAGAGCGTTTTAAATACGAATATTGCGAATGGAATAATGGCAGGGCTGGATGGTGTGGCACCGGATTGAAAGACTTTAACTAATTGTGCTTAAGGCGCACGTACACTAAGCAGCAACGATGTCACTACACACACACACACACGCACCGTACACTAACGATCGTTAGGTTTAAAGGATTGCAAAGAAACATGTGATTGATGAGACATTATAGGCAAAGGGGGCCATTAATTGCTGCACCGCCGCCTCTCCCCGAGCTGGTACAGAAGCAACAGAAAAGAAAAACCCCAACCCACAGCACAGCACACCTTCGTCCACCGTATAATCCGAACCCACACGATTGTCCATGCGACATGCGACTAAACTTCCCAGGAATTGGTTATTTAGATATGGTTACGAGCAAAAGGACCAA]

[+] EMBL BM587308             [CCGAGGGGGTGGTATATTCTAGGCATAGTAATGTTGTTCCGTTGCGTTCGGTTACATGTTCATACAGCCGGTAGGGTACGGATTAACAAAAAAAAAACATTGCACTAGTGTGTTAAGCGGTGTGCAACCATTCCCAGAAGCAACGTAACGTTCGGTTTTAGTTTAGTTACCTCTTACTCCTCGTACACGTGATACACGATCAACCCAATCCTCCGTAGTTAGTTTGTTGTACAAAAGCAAAAGAAACGTATGTATGTGTGTGTGTGTGTGCGTGCGTGTCTGTGAAACTATTTTGAAACGAACTCAGCAAAACGCGGGAACGAATTATACAACCAAACTTAGACAGACGGACAGACCGATAGAGGCAGCCTAAACATTAGAATAGGAATATGAACCAAATATATTATACACGATGGTGGTTGGCATTGGGAGAAGCGTACGGGAAGAATAGATAGGTTGCGCGTGGTGGTGCTCTGCCCC CCTCCCCCTCCCAAACTCCGTCGCACGCGATGTTGTTCATTTCGTTTCCTTTCTCAAGAGCGTTTTAAATACGAATATTGCGAATGGAATAATGGCAGGGCTGGATGGTGTGGCACCGGATTGAAAGACTTTAACTAATTGTGCTTAAGGCGCACGTACACTAAGCAGCAACGATGTCACTACACACACACACACACGC                                                                                                                                                                                                                                                                         ]
[+] EMBL BX611495             [                                                                                                                                                                                                                                                                                                                                                                            GCAGCCTAAACATTAGAATAGGAATATGAACCAAATATATTATACACGATGGTGGTTGGCATTGGGAGAAGCGTACGGGAAGAATAGATAGGTTGCGCGTGGTGGTGCCCTGCCCCACCTCCCCCTCCCAGAATCCCTCGCACGCGATGTTGTTCATTTCGTTTCCTTTCTCAAGAGCGTTTTAAATACGAATCATGCGAATGGAATAATGGCAGGGCTGGATGGTGTGGCACCGGATTGAAAGACTTTAACTAATTGTGCTTAAGGCGCACGTACACTAAGCAGCAACGATGTCACTACACACACACACACGCACACCGTACACTAACGATCGTTAGGTTTAAAGGATTGCAAAGAAACATGTGATTGATGAGACATTATAGGCAAAGGGGGCCATTAATTGCTGCACCGCCGCCTCTCCCCGAGCTGGTACAGAAGCAACAGAAAAGAAAAACCCCAACCCACAGCACAGCACACCTTCGTCCACCGTATAATCCGAACCCACACGATTGTCCATGCGACATGCGACTAAACTTCCCAGGAATTGGTTATTTAGATATGGTTACGAGCAAAAGGACCAA]




>consensus_4719#0
CCGAGGGGGTGGTATATTCTAGGCATAGTAATGTTGTTCCGTTGCGTTCGGTTACATGTT
CATACAGCCGGTAGGGTACGGATTAACAAAAAAAAAACATTGCACTAGTGTGTTAAGCGG
TGTGCAACCATTCCCAGAAGCAACGTAACGTTCGGTTTTAGTTTAGTTACCTCTTACTCC
TCGTACACGTGATACACGATCAACCCAATCCTCCGTAGTTAGTTTGTTGTACAAAAGCAA
AAGAAACGTATGTATGTGTGTGTGTGTGTGCGTGCGTGTCTGTGAAACTATTTTGAAACG
AACTCAGCAAAACGCGGGAACGAATTATACAACCAAACTTAGACAGACGGACAGACCGAT
AGAGGCAGCCTAAACATTAGAATAGGAATATGAACCAAATATATTATACACGATGGTGGT
TGGCATTGGGAGAAGCGTACGGGAAGAATAGATAGGTTGCGCGTGGTGGTGCTCTGCCCC
CCTCCCCCTCCCAAACTCCGTCGCACGCGATGTTGTTCATTTCGTTTCCTTTCTCAAGAG
CGTTTTAAATACGAATATTGCGAATGGAATAATGGCAGGGCTGGATGGTGTGGCACCGGA
TTGAAAGACTTTAACTAATTGTGCTTAAGGCGCACGTACACTAAGCAGCAACGATGTCAC
TACACACACACACACACGCACCGTACACTAACGATCGTTAGGTTTAAAGGATTGCAAAGA
AACATGTGATTGATGAGACATTATAGGCAAAGGGGGCCATTAATTGCTGCACCGCCGCCT
CTCCCCGAGCTGGTACAGAAGCAACAGAAAAGAAAAACCCCAACCCACAGCACAGCACAC
CTTCGTCCACCGTATAATCCGAACCCACACGATTGTCCATGCGACATGCGACTAAACTTC
CCAGGAATTGGTTATTTAGATATGGTTACGAGCAAAAGGACCAA

consensusID : consensus_4719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [CCGCAAAGGGGGCCATTAATGTCTCATCAATCACATGTTTCCCGAGCTGGTACAGAAGCAACAGAAAAGAAAAACCCCAACCCACAGCACAGCACACCTTCGTCCACCGTATAATCCGAACCCACTAACAGGGCACAGGGCGTACGCGCCTGTTTCCCACATACCCTTTTTGAAAACTCACACCGACCACACAAAACATCGGTACACAAACCTATACACACTGAGAGCGAGAGAGAGAGAAAGCGCAGAATACGCAGGAGGAAGAGGTGGACGTTCCACGGCACACTGGAAAGGAAAGGTTCTCCCCTCCCCAACAGTCTAACGTGTTACAGAATAGAAACATATTTACCGATT]

[+] EMBL BM648137             [CCGCAAAGGGGGCCATTAATGTCTCATCAATCACATGTTTCCCGAGCTGGTACAGAAGCAACAGAAAAGAAAAACCCCAACCCACAGCACAGCACACCTTCGTCCACCGTATAATCCGAACCCACTAACAGGGCACAGGGCGTACGCGCCTGTTTCCCACATACCCTTTTTGAAAACTCACACCGACCACACAAAACATCGGTACACAAACCTATACACACTGAGAGCGAGAGAGAGAGAAAGCGCAGAATACGCAGGAGGAAGAGGTGGACGTTCCACGGCACACTGGAAAGGAAAGGTTCTCCCCTCCCCAACAGTCTAACGTGTTACAGAATAGAAACATATTTACCGATT]




>consensus_4719#1
CCGCAAAGGGGGCCATTAATGTCTCATCAATCACATGTTTCCCGAGCTGGTACAGAAGCA
ACAGAAAAGAAAAACCCCAACCCACAGCACAGCACACCTTCGTCCACCGTATAATCCGAA
CCCACTAACAGGGCACAGGGCGTACGCGCCTGTTTCCCACATACCCTTTTTGAAAACTCA
CACCGACCACACAAAACATCGGTACACAAACCTATACACACTGAGAGCGAGAGAGAGAGA
AAGCGCAGAATACGCAGGAGGAAGAGGTGGACGTTCCACGGCACACTGGAAAGGAAAGGT
TCTCCCCTCCCCAACAGTCTAACGTGTTACAGAATAGAAACATATTTACCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4719#0      CCGAGGGGGTGGTATATTCTAGGCATAGTAATGTTGTTCCGTTGCGTTCGGTTACATGTT 60
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CATACAGCCGGTAGGGTACGGATTAACAAAAAAAAAACATTGCACTAGTGTGTTAAGCGG 120
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TGTGCAACCATTCCCAGAAGCAACGTAACGTTCGGTTTTAGTTTAGTTACCTCTTACTCC 180
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TCGTACACGTGATACACGATCAACCCAATCCTCCGTAGTTAGTTTGTTGTACAAAAGCAA 240
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AAGAAACGTATGTATGTGTGTGTGTGTGTGCGTGCGTGTCTGTGAAACTATTTTGAAACG 300
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AACTCAGCAAAACGCGGGAACGAATTATACAACCAAACTTAGACAGACGGACAGACCGAT 360
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AGAGGCAGCCTAAACATTAGAATAGGAATATGAACCAAATATATTATACACGATGGTGGT 420
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TGGCATTGGGAGAAGCGTACGGGAAGAATAGATAGGTTGCGCGTGGTGGTGCTCTGCCCC 480
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CCTCCCCCTCCCAAACTCCGTCGCACGCGATGTTGTTCATTTCGTTTCCTTTCTCAAGAG 540
consensus_4719#1      --------------------CCGCAAAGGGGGCCATTAAT---GTCTCATCAATCACATG 37
                                           ****   *  *   ** **   ** ** *   ***   *

consensus_4719#0      CGTTTTAAATACGAATATTGCGAATGGAATAATGGCAGGGCTGGATGGTGTGGCACCGGA 600
consensus_4719#1      TTTCCCGAGCTGGTACA--------GAAGCAACAGAAAAGAAAAACCCCAACCCACAGCA 89
                        *    *    * * *        * *  **  * *  *    *        *** * *

consensus_4719#0      TTGAAAGACTTTAACTAAT-TGTGCTTAAGGCGCACGTACACTAAGCAGCAACGATGTCA 659
consensus_4719#1      CAGCACACCTTCGTCCACCGTATAATCCGAACCCACTAACAGGGCACAGGGCGTACGCGC 149
                        * *   ***   * *   * *  *     * ***  ***     ***     * *   

consensus_4719#0      CTACACACACACACACACGCACCGTACACTAACGATCGTTAGGTTTAAAGGATTGCAAAG 719
consensus_4719#1      CTGT-TTCCCACATACCCTTTTTGAAAACTCAC-ACCGACCACACAAAACATCGGTACAC 207
                      **     * **** ** *     * * *** ** * **        ***     * * * 

consensus_4719#0      AAACATGTGATTGATGAGACATTATAGGCAAAGGGGGCCATTAATTGCTGCACCGCCGCC 779
consensus_4719#1      AAACCTATACACACTGAGA-GCGAGAGAGAGAGAAAGCGCAGAA----TACGCAGGAGGA 262
                      **** * *      *****    * **  * **   **    **    * * * *  *  

consensus_4719#0      TCTCCCCGAGCTGGTACAGAAGCAACAGAAAAGAAAAACCCCAACCCACAGCACAGCACA 839
consensus_4719#1      AGAGGTGGACGTTCCACGGCA-CACTGGAAAGGAAAGGTTCTCCCCTCCCCAACAGTCTA 321
                             **  *   ** * * **   **** ****    *   **  *   ****   *

consensus_4719#0      CCTTCGTCCACCGTATAATCCGAACCCACACGATTGTCCATGCGACATGCGACTAAACTT 899
consensus_4719#1      ACGTGTTACAGAATAGAAAC-ATATTTAC-CGATT------------------------- 354
                       * *  * **   ** ** *   *   ** *****                         

consensus_4719#0      CCCAGGAATTGGTTATTTAGATATGGTTACGAGCAAAAGGACCAA 944
consensus_4719#1      ---------------------------------------------