These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 914 fasta sequence [GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTGTAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTTGCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATGACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCACTATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGGAATGAAAAGAAAGGGACATACTTATCACTCTTGGTTTTATTGAACATTGACGATGGAGGAGGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACATGATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGTTTACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGCACTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGGAAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACTCATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGCAGCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGTTTGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGGCAACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCNAATTAAATCGCCTTT] [+] EMBL BX468445 [GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTGTAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTTGCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATGACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCACTATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGGAATGAAAAGAAAGGGACATACTTATCACTCTTGGTTTTATTGAACATTGACGATGGAGGAGGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACATGATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGTTTACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGCACTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGGAAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACTCATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGCAGCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGTTTGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGGCAACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCNAATTAAATCGCCTTT] consensusID : consensus_473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCAATAAGACTCATTAAAACTGACTAAGATTAGTGTTAAACGAAAGGTGAATTGTGCACGCCAAGCAGCAGCAGCAAGTGACTAAACAAAAAACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAATGTAAGAGGAAATTGGGGCAAAAAAATGGAACAAACTAGCGTAAAGTACATATACCTGCACACAAACAAACTAACTCATCTTATACCGTAACAATCGTACAGCATAAAAATGATGATTCAAATGGAATAGAGACACGATAGATGAGTCACTGCAAATTGTTAGTGGAGTAGAGAGAAGTTAAAATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAAACCGCAAAGCAGGAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGGAACAGGTGNATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAACAACACNNNNATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT] [+] EMBL CF541925 [AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCAATAAGACTCATTAAAACTGACTAAGATTAGTGTTAAACGAAAGGTGAATTGTGCACGCCAAGCAGCAGCAGCAAGTGACTAAACAAAAAACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAATGTAAGAGGAAATTGGGGCAAAAAAATGGAACAAACTAGCGTAAAGTACATATACCTGCACACAAACAAACTAACTCATCTTATACCGTAACAATCGTACAGCATAAAAATGATGATTCAAATGGAATAGAGACACGATAGATGAGTCACTGCAAATTGTTAGTGGAGTAGAGAGAAGTTAAAATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAAACCGCAAAGCAGGAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGGAACAGGTGNATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAACAACACNNNNATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_473#0 GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTG 60 consensus_473#1 ------------------------------------------------------------ consensus_473#0 TAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTT 120 consensus_473#1 ------------------------------------------------------------ consensus_473#0 GCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATG 180 consensus_473#1 --------------------------------------AAAAAGCTGAGTATACACCGTG 22 ***** * *** ** * ** consensus_473#0 ACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCAC 240 consensus_473#1 GACATCTAACCATCATATGCAAGCATCAATAAGACTCATTAAAACTGACTAAGATT--AG 80 * * *** ** ** * * ** **** ** * ** ** * consensus_473#0 TATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGG 300 consensus_473#1 TGTTAAACGAAAGGTGAATTGTGCACGCCAAG--CAGCAGCAGCAAGTGACTAAACAAAA 138 * ** * ** * * * * * * * * ** ** consensus_473#0 AATGAAAAGAAAGGGACATACTTATCAC-TCTTGGTTTTATTGAACATTGACGATGGAGG 359 consensus_473#1 AACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAATGTAAGAGGAAATTGGGGC 198 ** * * * * * * ** * ** * * ** * ** *** * consensus_473#0 AGGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACA 419 consensus_473#1 AAAA---AAATGGAACAAACTAGCGTAAAGTACATATACCTGCACACAAACAAACTAACT 255 * * * * * ** *** *** ** * * ** * * ** ** *** consensus_473#0 TGATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGT 479 consensus_473#1 CATCTTATACCGTAACAATCGTACAGC-----ATAAAAATGATGATT-CAAATGGAATAG 309 ** * ** * * *** ** *** ******** ***** *** consensus_473#0 TTACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGC 539 consensus_473#1 AGACACGATAGATGAGTCACTGCAAAT--TGTTAGTGGAGTAGA------GAGAAGTTAA 361 ** * * * * * * * * ** * ** *** * * * * ** consensus_473#0 ACTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGG 599 consensus_473#1 AATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAA-ACCGCA 420 * ** * * * ** * * *** * ** * * ** * * ** consensus_473#0 AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACT 659 consensus_473#1 AAGCAG--GAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGC-GTGTGTGTG 477 ** ** ** ** **** * * * ** * * * ** * consensus_473#0 CATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGC 719 consensus_473#1 TGTGTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGG------ 531 * ** * * * * ** * ** ***** * consensus_473#0 AGCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGT 779 consensus_473#1 AACAGGTGNATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAAC 591 * **** * ** * *** * * ** * * * consensus_473#0 TTGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGG 839 consensus_473#1 AACACNNNNATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT------ 645 * * * * * * * *** ** * consensus_473#0 CAACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCN 899 consensus_473#1 ------------------------------------------------------------ consensus_473#0 AATTAAATCGCCTTT 914 consensus_473#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||