cluster # 4731

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Anopheles gambiae
cluster # 4731 cluster # 4731 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4731#0 length = 690 sequences # 1

consensus_4731#1 length = 628 sequences # 1
consensus_4731#2 length = 610 sequences # 1

consensusID : consensus_4731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CAAAACCCGATAAACACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAAAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCCATCTATGCTTTTCACAACAGACAATTGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGACACATTAGCGGATGAATAATTTCGATTCGGTGGCGGCTTCAGGTAAAAATGTCTCAAACTGGCAAAACACAGTGGCACGATACAGTGAAACCTCTCACTTTTCGCACTAGCAAGCAAATCTCAAGTCGCGTTTGTGGCGAAATATTGTTCCTCTGCTTCGAATCCTGCAACGGGCTGCTGTAGCGAGCCACACACGCAGTAGAGCAAGCACCAGGCACAGTTATGACTCAGACAGCATTATGCTAGCGCGAATAGATGAGGAAGGAGTAGTAAACACGCGCCCGCCCGATGAAGAATTCGAACGACAGTACTCTCAAGAGTAGATGAGATGACGGCGAAGACCCCGCGCAATCATCGGCCGGAAGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGGATAATAGAGTATT]

[+] EMBL BX615874             [CAAAACCCGATAAACACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAAAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCCATCTATGCTTTTCACAACAGACAATTGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGACACATTAGCGGATGAATAATTTCGATTCGGTGGCGGCTTCAGGTAAAAATGTCTCAAACTGGCAAAACACAGTGGCACGATACAGTGAAACCTCTCACTTTTCGCACTAGCAAGCAAATCTCAAGTCGCGTTTGTGGCGAAATATTGTTCCTCTGCTTCGAATCCTGCAACGGGCTGCTGTAGCGAGCCACACACGCAGTAGAGCAAGCACCAGGCACAGTTATGACTCAGACAGCATTATGCTAGCGCGAATAGATGAGGAAGGAGTAGTAAACACGCGCCCGCCCGATGAAGAATTCGAACGACAGTACTCTCAAGAGTAGATGAGATGACGGCGAAGACCCCGCGCAATCATCGGCCGGAAGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGGATAATAGAGTATT]




>consensus_4731#0
CAAAACCCGATAAACACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAG
CTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAA
CAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAAAAGAG
GAGAAGGTCATTTAATGTTCTCTACCACCCCATCTATGCTTTTCACAACAGACAATTGGA
GAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGACACATTAGCGGATGAATAA
TTTCGATTCGGTGGCGGCTTCAGGTAAAAATGTCTCAAACTGGCAAAACACAGTGGCACG
ATACAGTGAAACCTCTCACTTTTCGCACTAGCAAGCAAATCTCAAGTCGCGTTTGTGGCG
AAATATTGTTCCTCTGCTTCGAATCCTGCAACGGGCTGCTGTAGCGAGCCACACACGCAG
TAGAGCAAGCACCAGGCACAGTTATGACTCAGACAGCATTATGCTAGCGCGAATAGATGA
GGAAGGAGTAGTAAACACGCGCCCGCCCGATGAAGAATTCGAACGACAGTACTCTCAAGA
GTAGATGAGATGACGGCGAAGACCCCGCGCAATCATCGGCCGGAAGAAACAGAGAGAGAG
AGAGAGAGCGAGAGAGGATAATAGAGTATT

consensusID : consensus_4731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGGAAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCAAGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAACAAACAAAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACATGTTTAATGTAAGTTTTTGTTTTCTCCTATGTTTAGTCTGCCTTTTGCGCCTAGCTGGACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAACGCTAACGGATCGCCGCAAAACCACGCGTACAAACGGTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGTATAACACTTCCACAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAATTGGAAGTTGGTATAATAACATCAACAAAAACAGAATTATCCTTTGTTTGTGTCCAC]

[+] EMBL BM599954             [CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGGAAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCAAGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAACAAACAAAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACATGTTTAATGTAAGTTTTTGTTTTCTCCTATGTTTAGTCTGCCTTTTGCGCCTAGCTGGACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAACGCTAACGGATCGCCGCAAAACCACGCGTACAAACGGTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGTATAACACTTCCACAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAATTGGAAGTTGGTATAATAACATCAACAAAAACAGAATTATCCTTTGTTTGTGTCCAC]




>consensus_4731#1
CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGG
AAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCA
AGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAA
CAAACAAAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATTT
CCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGC
CCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACATGTTTAA
TGTAAGTTTTTGTTTTCTCCTATGTTTAGTCTGCCTTTTGCGCCTAGCTGGACGTGAAAG
CTTTAAGGCAAAATTATACAATGCTAACGCTAACGGATCGCCGCAAAACCACGCGTACAA
ACGGTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGTATAACACTTCCACAAAGGG
AGCTGTTATACACGACCGTTAGCTTCGTGAATTGGAAGTTGGTATAATAACATCAACAAA
AACAGAATTATCCTTTGTTTGTGTCCAC

consensusID : consensus_4731#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [AATCGCCCCGAGGACAAATCAAACAAACAACAAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACACGTTTAATGTAAGTTTTGTTTTCTCCTATGTTTAGTCTGCCTATTGCCAAGCTGAACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAGCGCTAACGGATCGCCCTAAAACCACGCGTACAAACGCTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAACAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCATCTATGCTCTTTCACAACAGACAATGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGGACACATTAGCGGACTGAATATTC]

[+] EMBL AL933060             [AATCGCCCCGAGGACAAATCAAACAAACAACAAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACACGTTTAATGTAAGTTTTGTTTTCTCCTATGTTTAGTCTGCCTATTGCCAAGCTGAACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAGCGCTAACGGATCGCCCTAAAACCACGCGTACAAACGCTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAACAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCATCTATGCTCTTTCACAACAGACAATGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGGACACATTAGCGGACTGAATATTC]




>consensus_4731#2
AATCGCCCCGAGGACAAATCAAACAAACAACAAATTATGTCATCAATTTTATTTTATTAT
CGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTG
TCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATAC
ACGTTTAATGTAAGTTTTGTTTTCTCCTATGTTTAGTCTGCCTATTGCCAAGCTGAACGT
GAAAGCTTTAAGGCAAAATTATACAATGCTAGCGCTAACGGATCGCCCTAAAACCACGCG
TACAAACGCTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGCATAACACTTCCATA
AAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACA
ACAAAAACAGAATTATCCTTTGTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGA
ACAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCATCTATGCTCTTTCACAACAGAC
AATGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGGACACATTAGCGGA
CTGAATATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4731#1      CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGG 60
consensus_4731#2      ------------------------------------------------------------
consensus_4731#0      ------------CAAAACCCGATAAACACATTAATGTTGTTACTTTTT---AGCATAACA 45
                                                                                  

consensus_4731#1      AAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCA 120
consensus_4731#2      ------------------------------------------------------------
consensus_4731#0      CTTCCATAAAGGGAGCTGTTATACACGACCGTT-------AGCTTCGTGAAATGGAAGTT 98
                                                                                  

consensus_4731#1      AGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAA 180
consensus_4731#2      ----------------------------------------------------AATCGCCC 8
consensus_4731#0      GGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACA- 157
                                                                          **      

consensus_4731#1      CAAACA-AAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATT 239
consensus_4731#2      CGAGGACAAATCAAACAAACAA-CAAATTATGTCATCAATTTTATTTTATTATCGCTATT 67
consensus_4731#0      -GGACAGGATGTATGTGAA-AAGAGGAGAAGGTCATTTAATGTTCTCTACCACC-CCATC 214
                           *  *   *    ** **    *  * *****  * * *  * **  * * * ** 

consensus_4731#1      TCCGGGTCTACGTACGGAC--TTGGCGTGGTGTTGTGGATCGT-TGCGTTGGTTTGTCGC 296
consensus_4731#2      TCCGGGTCTACGTACGGAC--TTGGCGTGGTGTTGTGGATCGT-TGCGTTGGTTTGTCGC 124
consensus_4731#0      TATGCTTTTCACAACAGACAATTGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTA 274
                      *  *  * *    ** ***  **** *  *      **   ** ** **      *    

consensus_4731#1      TTGCCCGCAAA--ACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACAT 354
consensus_4731#2      TTGCCCGCAAA--ACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACAC 182
consensus_4731#0      TTGGCGACACATTAGCGGATGAATA-ATTTCGATTCGGTGGCGGCTTCAGGTAAAAATGT 333
                      *** *  ** *  * * *** ** * *** *  *    *       **   * ** *   

consensus_4731#1      GTTTAAT--GTAAGTTTTTGTTTTCTCCTATGTTTAG---TCTGCCTTTTGCGCCTAGC- 408
consensus_4731#2      GTTTAAT--GTAAGTTTT-GTTTTCTCCTATGTTTAG---TCTGCCTATTGC--CAAGC- 233
consensus_4731#0      CTCAAACTGGCAAAACACAGTGGCACGATACAGTGAAACCTCTCACTTTTCGCACTAGCA 393
                       *  **   * **      **       **   * *    ***  ** **    * *** 

consensus_4731#1      --TGGACGTGAAAGC---TTTAAGGCAAAATTATA---CAATGCT---AACGCT--AACG 455
consensus_4731#2      --TGAACGTGAAAGC---TTTAAGGCAAAATTATA---CAATGCT---AGCGCT--AACG 280
consensus_4731#0      AGCAAATCTCAAGTCGCGTTTGTGGCGAAATATTGTTCCTCTGCTTCGAATCCTGCAACG 453
                           *  * **  *   ***  *** ****  *    *  ****   *   **  ****

consensus_4731#1      GATCGCCGCAA--AACCACGCGTACAAACGGTTTGGTTTATGGTACATTAATGTTGTTAC 513
consensus_4731#2      GATCGCCCTAA--AACCACGCGTACAAACGCTTTGGTTTATGGTACATTAATGTTGTTAC 338
consensus_4731#0      GGCTGCTGTAGCGAGCCACACACGCAGTAGAGCAAGCACCAGGCACAGTTATGACTCAGA 513
                      *   **   *   * **** *   **   *     *     ** *** * ***       

consensus_4731#1      T--TTTTAGTATAACACTTCCACA-AAGGGAGCTGTTATACACGACCGTTAGCTTCGTGA 570
consensus_4731#2      T--TTTTAGCATAACACTTCCATA-AAGGGAGCTGTTATACACGACCGTTAGCTTCGTGA 395
consensus_4731#0      CAGCATTATGCTAGCGCGAATAGATGAGGAAGGAGTAGTAAACACGCGCCCGCCCGATGA 573
                           ***   ** * *    * *  *** **  **  ** **   **   **    ***

consensus_4731#1      ATTGGAAGTTGGTATAATAACATCAACAAAAACAGAATTATCCTTTGTTTGTGTCCAC-- 628
consensus_4731#2      AATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTT-GTGTCCACAT 454
consensus_4731#0      A----GAATTCGAACGACAGTACTCTCAAGAGTAGA-TGAGATGACGGCGAAGACCCCGC 628
                      *     * ** * *  * *  *    *** *  *** * *      *     * ** *  

consensus_4731#1      ------------------------------------------------------------
consensus_4731#2      GCAAAGACAGGACAGGATGTATGTGAACAAGAGGAGAAGGTCATTTAATGTTCTCTACCA 514
consensus_4731#0      GCAATCATCGGCCGGAAGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGGATAATAGAGTA 688
                                                                                  

consensus_4731#1      ------------------------------------------------------------
consensus_4731#2      CCCATCTATGCTCTTTCACAACAGACAATGGAGAAGGAACCCGGTGTGTGTGTGTGTACC 574
consensus_4731#0      TT---------------------------------------------------------- 690
                                                                                  

consensus_4731#1      ------------------------------------
consensus_4731#2      AGAGTATTGGCGGACACATTAGCGGACTGAATATTC 610
consensus_4731#0      ------------------------------------