These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence [CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGATGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCGTCTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAACCGCGCCATTCGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCGATGGAGGTTCCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATTTAGTCTGCGGAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGGAAAAAA] [+] EMBL BX466437 [CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGATGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCGTCTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAACCGCGCCATTCGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCGATGGAGGTTCCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATTTAGTCTGCGGAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGGAAAAAA] consensusID : consensus_4738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [CCGCAACTTTGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCCATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCGAACGGTATGCAAATTACCTTTACGGT-GATTGATGAGAACAAACATTAATCTGCGGAAAGAAAAAGCCCATTACTGGTGTTCA] [+] EMBL BM611927 [CCGCAACTTTGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCCATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCGAACGGTATGCAAATTACCTTTACGGT GATTGATGAGAACAAACATTAATCTGCGGAAAGAAAAAGCCCATTACTGGTGTTCA] [+] EMBL BM594182 [ ccgCTTGGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACAGATTATTCGGTGAAGTCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCCATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCGAACGGTATGCAAATTACCTTTACGGTGGATTGATGAGAACAAACATTAATCTGCGGAAAGAAAAAGCCCATTACTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4738#0 ---------CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGC 51 consensus_4738#1 CCGCAACTTTGGAGCAGCTCTT-TCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGC 59 ** * ** * *** ** ****************************** consensus_4738#0 TGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGC 111 consensus_4738#1 TGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGC 119 ************************************************************ consensus_4738#0 CATGTCCGAGAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGAC 171 consensus_4738#1 CATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGAC 179 *************************** **************** *************** consensus_4738#0 AGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGC 231 consensus_4738#1 AGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGC 239 ************************************************************ consensus_4738#0 CGATGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAG 291 consensus_4738#1 CGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAG 299 *** ******************************************************** consensus_4738#0 AGAACACACAGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACG 351 consensus_4738#1 AGAACACACAGTGGAA---AAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACG 356 **************** ***************************************** consensus_4738#0 GTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATC 411 consensus_4738#1 GTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATC 416 ************************************************************ consensus_4738#0 TTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACA 471 consensus_4738#1 TTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACA 476 ************************************************************ consensus_4738#0 GGACACCGTCTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAAC 531 consensus_4738#1 GGACACCATCTCCATGGACCTACCGC-ATCCCGAAGGACAAATGTTCATGTACACCGAAC 535 ******* ****************** ********************************* consensus_4738#0 CGCGCCATTCGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCG 591 consensus_4738#1 CGC-CCATTCGCA--GCAAGCCTTGC--AACCGGTGGAACGTGATCAATGCCA-GCATCG 589 *** ********* ********** * *********************** ****** consensus_4738#0 ATGGAGGTTCCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATT 651 consensus_4738#1 -TGGAGGTTCCGAACGGTATGCAAATTACCTTTA-CGGTGATTGATGAGAACAAA-CATT 646 ********************* *********** ****************** * **** consensus_4738#0 TAGTCTGCGGAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGG 711 consensus_4738#1 -AATCTGCGGAAAGAAAAAGCCCATTACTGGTGTTCA----------------------- 682 * ******************************* consensus_4738#0 AAAAAA 717 consensus_4738#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||