cluster # 4738

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Anopheles gambiae
cluster # 4738 cluster # 4738 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4738#0 length = 717 sequences # 1

consensus_4738#1 length = 682 sequences # 2

consensusID : consensus_4738#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence

                              [CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGATGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCGTCTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAACCGCGCCATTCGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCGATGGAGGTTCCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATTTAGTCTGCGGAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGGAAAAAA]

[+] EMBL BX466437             [CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGATGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCGTCTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAACCGCGCCATTCGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCGATGGAGGTTCCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATTTAGTCTGCGGAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGGAAAAAA]




>consensus_4738#0
CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAA
CAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGA
GAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGACAGATTATTC
GGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGATGCACA
GGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACAC
AGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCA
GGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGG
ATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCGT
CTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAACCGCGCCATT
CGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCGATGGAGGTT
CCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATTTAGTCTGCG
GAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGGAAAAAA

consensusID : consensus_4738#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 682
fasta sequence

                              [CCGCAACTTTGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCCATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCGAACGGTATGCAAATTACCTTTACGGT-GATTGATGAGAACAAACATTAATCTGCGGAAAGAAAAAGCCCATTACTGGTGTTCA]

[+] EMBL BM611927             [CCGCAACTTTGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACAGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCCATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCGAACGGTATGCAAATTACCTTTACGGT GATTGATGAGAACAAACATTAATCTGCGGAAAGAAAAAGCCCATTACTGGTGTTCA]
[+] EMBL BM594182             [   ccgCTTGGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCTGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCCATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACAGATTATTCGGTGAAGTCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCCGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGAGAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGACACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCCATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCGAACGGTATGCAAATTACCTTTACGGTGGATTGATGAGAACAAACATTAATCTGCGGAAAGAAAAAGCCCATTACTGG      ]




>consensus_4738#1
CCGCAACTTTGGAGCAGCTCTTTCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGCT
GGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGCC
ATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGACA
GATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGCC
GACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAGA
GAACACACAGTGGAAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACGGTCG
GTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATCTTCC
AACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACAGGAC
ACCATCTCCATGGACCTACCGCATCCCGAAGGACAAATGTTCATGTACACCGAACCGCCC
ATTCGCAGCAAGCCTTGCAACCGGTGGAACGTGATCAATGCCAGCATCGTGGAGGTTCCG
AACGGTATGCAAATTACCTTTACGGTGATTGATGAGAACAAACATTAATCTGCGGAAAGA
AAAAGCCCATTACTGGTGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4738#0      ---------CAGATCGGCACAGGTCGNTTNGAAAATGATTCATCTTTTAAATTTTATAGC 51
consensus_4738#1      CCGCAACTTTGGAGCAGCTCTT-TCGGTTTGAAAATGATTCATCTTTTAAATTTTATAGC 59
                                 ** * ** *   *** ** ******************************

consensus_4738#0      TGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGC 111
consensus_4738#1      TGGCATGAACAACACGCTGGACTGCAAGTGTGAAAACGGTGAGCCCCGGGAACAATTAGC 119
                      ************************************************************

consensus_4738#0      CATGTCCGAGAACAGTACCGAACATATCGACCCCCACTGCGTGAGCTGTTGCAATACGAC 171
consensus_4738#1      CATGTCCGAGAACAGTACCGAACATATGGACCCCCACTGCGTGACCTGTTGCAATACGAC 179
                      *************************** **************** ***************

consensus_4738#0      AGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGC 231
consensus_4738#1      AGATTATTCGGTGAAATCATTACGAAAATTGTTCCTCTTGAACCACCTCGAGGGGCCGGC 239
                      ************************************************************

consensus_4738#0      CGATGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAG 291
consensus_4738#1      CGACGCACAGGCTAATCCAGCAGCCTCCAACATTGAGAAGCTTCCCATATGCACGTGCAG 299
                      *** ********************************************************

consensus_4738#0      AGAACACACAGTGGAAAGAAAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACG 351
consensus_4738#1      AGAACACACAGTGGAA---AAGGAAAAGAAATGTTCAGAAGAGAAGCTATGTGAAACACG 356
                      ****************   *****************************************

consensus_4738#0      GTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATC 411
consensus_4738#1      GTCGGTGCAGGAGCTGAGACAGCTGTACGAGGCGAAGGTGAAATCTCTCGAGCAAGAATC 416
                      ************************************************************

consensus_4738#0      TTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACA 471
consensus_4738#1      TTCCAACGGATCGATCGGCCGATACTCGAGACCTGTCACCGCTAGAACAGATGATCGACA 476
                      ************************************************************

consensus_4738#0      GGACACCGTCTCCATGGACCTACCGCGATCCCGAAGGACAAATGTTCATGTACACCGAAC 531
consensus_4738#1      GGACACCATCTCCATGGACCTACCGC-ATCCCGAAGGACAAATGTTCATGTACACCGAAC 535
                      ******* ****************** *********************************

consensus_4738#0      CGCGCCATTCGCAAGGCAAGCCTTGGCAANCCGGTGGAACGTGATCAATGCCAAGCATCG 591
consensus_4738#1      CGC-CCATTCGCA--GCAAGCCTTGC--AACCGGTGGAACGTGATCAATGCCA-GCATCG 589
                      *** *********  **********   * *********************** ******

consensus_4738#0      ATGGAGGTTCCGAACGGTATGCNAATTACCTTTAACGGTGATTGATGAGAACANAGCATT 651
consensus_4738#1      -TGGAGGTTCCGAACGGTATGCAAATTACCTTTA-CGGTGATTGATGAGAACAAA-CATT 646
                       ********************* *********** ****************** * ****

consensus_4738#0      TAGTCTGCGGAAAGAAAAAGCCCATTACTGGTGTATCCAGAATTTGGNNGAAGTTTAAGG 711
consensus_4738#1      -AATCTGCGGAAAGAAAAAGCCCATTACTGGTGTTCA----------------------- 682
                       * *******************************                          

consensus_4738#0      AAAAAA 717
consensus_4738#1      ------