These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1192 fasta sequence [CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC] [+] EMBL BM656261 [CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCC ] [+] EMBL BM641977 [ ccgCTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCC GGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGG CGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC] consensusID : consensus_4740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTTGGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCCCCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGGCTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCTCCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT] [+] EMBL BM657331 [CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTTGGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCCCCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGGCTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCTCCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4740#0 ------------------------------------------------------------ consensus_4740#1 CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTT 60 consensus_4740#0 ------------------------------------------------------------ consensus_4740#1 GGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCC 120 consensus_4740#0 ------------------------------------------------------------ consensus_4740#1 CCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGG 180 consensus_4740#0 ---------------------------CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGC 33 consensus_4740#1 CTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCT 240 * * * * ** * consensus_4740#0 GCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC 93 consensus_4740#1 CCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC 300 * ********************************************************* consensus_4740#0 GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG 153 consensus_4740#1 GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG 360 ************************************************************ consensus_4740#0 GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG 213 consensus_4740#1 GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG 420 ************************************************************ consensus_4740#0 CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG 273 consensus_4740#1 CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG 480 ************************************************************ consensus_4740#0 ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA 333 consensus_4740#1 ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA 540 ************************************************************ consensus_4740#0 GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG 393 consensus_4740#1 GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG 600 ************************************************************ consensus_4740#0 GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC 453 consensus_4740#1 GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC 660 ************************************************************ consensus_4740#0 GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCG 513 consensus_4740#1 GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT----------------- 703 ******************************************* consensus_4740#0 CGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGG 573 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGAC 633 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAG 693 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 TATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGG 753 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 TGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGA 813 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 CAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAG 873 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 CAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACC 933 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAAT 993 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 CTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACC 1053 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCG 1113 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACC 1173 consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GGACTGGACGTGCAAACGC 1192 consensus_4740#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||