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Anopheles gambiae
cluster # 4740 cluster # 4740       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4740#0 length = 1192 sequences # 2  
consensus_4740#1 length = 703 sequences # 1  

consensusID : consensus_4740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1192
fasta sequence
                              [CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC]

[+] EMBL BM656261             [CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM641977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccgCTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCC GGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGG CGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC]


>consensus_4740#0 CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGC CCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGAC GCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTG TTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATG AAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCG GTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCA AACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCA CCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTT GGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTG TTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTT TCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCG ACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCG AGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGA CCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTG GAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGC CGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTG CTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGA CGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAG TGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATT CAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC



consensusID : consensus_4740#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTTGGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCCCCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGGCTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCTCCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT]

[+] EMBL BM657331             [CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTTGGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCCCCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGGCTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCTCCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT]


>consensus_4740#1 CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTT GGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCC CCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGG CTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCT CCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4740#0      ------------------------------------------------------------
consensus_4740#1      CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTT 60
                                                                                  

consensus_4740#0      ------------------------------------------------------------
consensus_4740#1      GGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCC 120
                                                                                  

consensus_4740#0      ------------------------------------------------------------
consensus_4740#1      CCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGG 180
                                                                                  

consensus_4740#0      ---------------------------CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGC 33
consensus_4740#1      CTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCT 240
                                                 *         *  *        * **  *    

consensus_4740#0      GCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC 93
consensus_4740#1      CCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC 300
                       * *********************************************************

consensus_4740#0      GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG 153
consensus_4740#1      GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG 360
                      ************************************************************

consensus_4740#0      GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG 213
consensus_4740#1      GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG 420
                      ************************************************************

consensus_4740#0      CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG 273
consensus_4740#1      CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG 480
                      ************************************************************

consensus_4740#0      ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA 333
consensus_4740#1      ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA 540
                      ************************************************************

consensus_4740#0      GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG 393
consensus_4740#1      GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG 600
                      ************************************************************

consensus_4740#0      GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC 453
consensus_4740#1      GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC 660
                      ************************************************************

consensus_4740#0      GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCG 513
consensus_4740#1      GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT----------------- 703
                      *******************************************                 

consensus_4740#0      CGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGG 573
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGAC 633
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAG 693
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      TATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGG 753
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      TGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGA 813
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      CAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAG 873
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      CAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACC 933
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAAT 993
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      CTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACC 1053
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCG 1113
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACC 1173
consensus_4740#1      ------------------------------------------------------------
                                                                                  

consensus_4740#0      GGACTGGACGTGCAAACGC 1192
consensus_4740#1      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)