|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence
[TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCGGGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAGCTAAAAGCGGAAGGCTACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAGCGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATTAGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAGCGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAAACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCGAAGCAAGCGTCACTCAAGCTGGAATCACTGATGGCCCCGTTGACGGGGAAGGCGCTGGAGGAGCTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAAC]
[+] EMBL BX614119 [TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCGGGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAGCTAAAAGCGGAAGGCTACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAGCGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATTAGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAGCGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAAACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAA ]
[+] EMBL BX612040 [ AAGAAAGCGAATCAAACCAAGGCACACAGTCGAGCGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATTAGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAGCGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAAACGCTGTTCGACGATTACCACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCGAAGCAAGCGTCACTCAAGCTGGAATCACTGATGGCCCCGTTGACGGGGAAGGCGCTGGAGGAGCTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAAC]
consensusID : consensus_4742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CCGCGGACGCGTGGGTTGACGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCTCCGGACGAGCTGGAAGAAAAGCTGAAGGAAGCCATCGCTGACCTCAATCCGAACGTGAAGGTCGACTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGGAACGGCGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTAGCTCAAACGACAGCTCTGTGCGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGCACCACAGCACGGCCACGGAGGCCGAAGTGGTGGTGCAGCTGACGACGGTTTTTGGCTGGCATCTGAGCGGCGTTGCGACCAGATTCTGCTCCGAGCTGACCAAGATGAAGGATGAGTCCGGCGACGATAGCGACAGTGCGCTTATAACCAACATTTTCTTGGGAGGGCTCGAACAGCACATCCTATGTTCAGAAT]
[+] EMBL BM592410 [CCGCGGACGCGTGGGTTGACGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCTCCGGACGAGCTGGAAGAAAAGCTGAAGGAAGCCATCGCTGACCTCAATCCGAACGTGAAGGTCGACTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGGAACGGCGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTAGCTCAAACGACAGCTCTGTGCGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGCACCACAGCACGGCCACGGAGGCCGAAGTGGTGGTGCAGCTGACGACGGTTTTTGGCTGGCATCTGAGCGGCGTTGCGACCAGATTCTGCTCCGAGCTGACCAAGATGAAGGATGAGTCCGGCGACGATAGCGACAGTGCGCTTATAACCAACATTTTCTTGGGAGGGCTCGAACAGCACATCCTATGTTCAGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4742#0 TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCG 60
consensus_4742#1 ------------------------------------------CCGCGGACGCGTGGGTTG 18
*** * * ** ** *
consensus_4742#0 GGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAG 120
consensus_4742#1 A----CGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAGGTGAAGGAGCTGTG 74
*** * * ** * * * * * ** * **** **** *
consensus_4742#0 CTAAAAGCGGAAGGCT-ACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAG 179
consensus_4742#1 CGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCTCCGGACGAGCTGGA 134
* ** ** * * *** ** * ** * * * ** *
consensus_4742#0 CGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGAT 239
consensus_4742#1 AGAAAAGCTGAAGGAAGCCA---------TCGCTGACCTCAATCCGAACGTGAAGGTCGA 185
*** ** * *** * * *** * * *** * * ****
consensus_4742#0 TAGCAGCAAGGTGATCAGCGGT-GGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGA 298
consensus_4742#1 CTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGGAACGG 245
**** * * * * ** **** * * * * *** * * ****
consensus_4742#0 TGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGC 358
consensus_4742#1 CGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTA---GCTCAAACGAC 302
** * * ** * * * * ** *** * **** *
consensus_4742#0 AGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGG 418
consensus_4742#1 AGCTCTGTG----CGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGC 358
*** * **** ** ** ** ** *** ** * ****
consensus_4742#0 AGCGCGA-ACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTT 477
consensus_4742#1 ACCACAGCACGGCCACGGAGGCCGAAGTGGTGGTG-CAGC-TGACGACGGTTTTTGGCTG 416
* * * **** * ** ** * * * *** * * * ** *
consensus_4742#0 GAAACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCG 537
consensus_4742#1 GCAT--CTGAGCGGCGTTG-CGACCAGATTCTGC-TCCGAGCTGACCAAGATGAAGGATG 472
* * *** ** ** ** **** * *** ** * ** * * *
consensus_4742#0 AAGCAAGCGTCACTCAAGCTGGAATCACTGATGGCCC-CGTTGACGGGGAAGGCGCTGGA 596
consensus_4742#1 AGTCCGGCGACGATAGCGACAGTG-CGCTTATAACCAACATTTTCTTGGGAGG-GCTCGA 530
* * *** * * * * * ** ** ** * ** * ** *** *** **
consensus_4742#0 GGAGCTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAA 656
consensus_4742#1 ACAGCAC----ATCCTATGTTCAGAAT--------------------------------- 553
*** * * *** * *
consensus_4742#0 C 657
consensus_4742#1 -
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||