cluster # 4748

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Anopheles gambiae
cluster # 4748 cluster # 4748 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4748#0 length = 706 sequences # 1

consensus_4748#1 length = 701 sequences # 1
consensus_4748#2 length = 253 sequences # 1

consensusID : consensus_4748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCAACAATCACAATTGACTTGCTGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAGTGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCTCTTCGTTCACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTAGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGGAAAAGCACGCGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAAACTGCAGAAGGCGGCAGAATCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTACGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCTGAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAAGATTAGAGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATCGACGATCTGAAGAAGCTGATCCTGAAAGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGTTCAAGCAGTACGAGCTTGCAGAAGGAGTTCGAGAAGCAGGAGAAGC]

[+] EMBL BM578548             [CCGCAACAATCACAATTGACTTGCTGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAGTGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCTCTTCGTTCACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTAGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGGAAAAGCACGCGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAAACTGCAGAAGGCGGCAGAATCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTACGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCTGAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAAGATTAGAGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATCGACGATCTGAAGAAGCTGATCCTGAAAGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGTTCAAGCAGTACGAGCTTGCAGAAGGAGTTCGAGAAGCAGGAGAAGC]




>consensus_4748#0
CCGCAACAATCACAATTGACTTGCTGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAG
TGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAG
TGAAACCAGCTCTTCGTTCACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGT
AGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTAGTGACACAGCCACCAAAGCCCGC
CGAAAAGGAGGAAAAGCACGCGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTA
CAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAA
ACTGCAGAAGGCGGCAGAATCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTA
CGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCT
GAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAA
GATTAGAGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATCGACGATCTGAAGAA
GCTGATCCTGAAAGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGT
TCAAGCAGTACGAGCTTGCAGAAGGAGTTCGAGAAGCAGGAGAAGC

consensusID : consensus_4748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [CCGCGGACGCGTGGGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAGTGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAAACTGCAGAAGGCGGCAGAGTCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTACGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCTGAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAAGATTAGCGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATAGACGATCTGAAGAAGCTGATCCTGAAGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGTTCAAGCAGTACGAGCTGCAGAAGGAGTTCGAGAAGCAGGAGAAGCTGCGCGCA]

[+] EMBL BM608258             [CCGCGGACGCGTGGGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAGTGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAAACTGCAGAAGGCGGCAGAGTCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTACGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCTGAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAAGATTAGCGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATAGACGATCTGAAGAAGCTGATCCTGAAGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGTTCAAGCAGTACGAGCTGCAGAAGGAGTTCGAGAAGCAGGAGAAGCTGCGCGCA]




>consensus_4748#1
CCGCGGACGCGTGGGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAGTGGCAACGACG
TTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCT
CTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGC
TGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGG
AAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATC
TCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAAACTGCAGAAGG
CGGCAGAGTCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTACGTTGGGCACC
ACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCTGAAGGAGCTAG
CGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAAGATTAGCGAGC
ACGTGGACCACTCGAACCCGCACACGTTCGAGATAGACGATCTGAAGAAGCTGATCCTGA
AGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGTTCAAGCAGTACG
AGCTGCAGAAGGAGTTCGAGAAGCAGGAGAAGCTGCGCGCA

consensusID : consensus_4748#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [ACCCACGCGTCCGCCCACGCGTCCGGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATCTCCA]

[+] EMBL BM634467             [ACCCACGCGTCCGCCCACGCGTCCGGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTGAAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGCCGAAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACAATAAGTATCTCCA]




>consensus_4748#2
ACCCACGCGTCCGCCCACGCGTCCGGGCAATTCCTGCTTTTACGATCCAACGCGGAAGTG
AAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGTAG
CCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGCCG
AAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTACA
ATAAGTATCTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4748#0      CCGCAACAATCACAATTGACTTGCTGTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAG 60
consensus_4748#1      ---------CCGCGGACGCGTGG--GTTCGGGTGAGCAGCTGGGTAGAATCGATTTGCAG 49
consensus_4748#2      ------------------------------------------------------------
                                                                                  

consensus_4748#0      TGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAG 120
consensus_4748#1      TGGCAACGACGTTGAAATCTCAGTCAAGGCAATTCCTGCTTTTACGATCCAACGCGGAAG 109
consensus_4748#2      -ACCCACG-CGTCCGCCCACGCGTCCGGGCAATTCCTGCTTTTACGATCCAACGCGGAAG 58
                         * *** ***          ***  *********************************

consensus_4748#0      TGAAACCAGCTCTTCGTTCACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGT 180
consensus_4748#1      TGAAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGT 169
consensus_4748#2      TGAAACCAGCTCTTCGTTTACGATGAAGGGCAATGGCAGCATACTGGTGCTGCTGTTGGT 118
                      ****************** *****************************************

consensus_4748#0      AGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTAGTGACACAGCCACCAAAGCCCGC 240
consensus_4748#1      AGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGC 229
consensus_4748#2      AGCCGGGATGCTGCCAACGATGCTGGGACTTCCGGTTGTGACACAGCCACCAAAGCCCGC 178
                      ************************************ ***********************

consensus_4748#0      CGAAAAGGAGGAAAAGCACGCGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTA 300
consensus_4748#1      CGAAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTA 289
consensus_4748#2      CGAAAAGGAGGAAAAGCACGAGGACAGCAACGTGGAACGCATGGAGAACATTATTGAGTA 238
                      ******************** ***************************************

consensus_4748#0      CAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAA 360
consensus_4748#1      CAATAAGTATCTCCAGGAGGTTGTGAACGTGCTGGAAAGCGATCCTGTGTTTGCTGAAAA 349
consensus_4748#2      CAATAAGTATCTCCA--------------------------------------------- 253
                      ***************                                             

consensus_4748#0      ACTGCAGAAGGCGGCAGAATCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTA 420
consensus_4748#1      ACTGCAGAAGGCGGCAGAGTCCGACATTCGGTCCGGTGTGATCGCGCAAGAGCTCGAGTA 409
consensus_4748#2      ------------------------------------------------------------
                                                                                  

consensus_4748#0      CGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCT 480
consensus_4748#1      CGTTGGGCACCACGTGCGGTCGCGGCTGGACGAGCTGAAGCGCATGGAGCTGCAGCGGCT 469
consensus_4748#2      ------------------------------------------------------------
                                                                                  

consensus_4748#0      GAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAA 540
consensus_4748#1      GAAGGAGCTAGCGACGAAGCAGTTCGAGCTGACGAACGAGATCGATCGGGACCATCTGAA 529
consensus_4748#2      ------------------------------------------------------------
                                                                                  

consensus_4748#0      GATTAGAGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATCGACGATCTGAAGAA 600
consensus_4748#1      GATTAGCGAGCACGTGGACCACTCGAACCCGCACACGTTCGAGATAGACGATCTGAAGAA 589
consensus_4748#2      ------------------------------------------------------------
                                                                                  

consensus_4748#0      GCTGATCCTGAAAGACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGT 660
consensus_4748#1      GCTGATCCTGAA-GACGTCGCAGGACCTGCAGGAGAACGATCGCCGCCGGCGGGAAGAGT 648
consensus_4748#2      ------------------------------------------------------------
                                                                                  

consensus_4748#0      TCAAGCAGTACGAGCTTGCAGAAGGAGTTCGAGAAGCAGGAGAAGC-------- 706
consensus_4748#1      TCAAGCAGTACGAGCT-GCAGAAGGAGTTCGAGAAGCAGGAGAAGCTGCGCGCA 701
consensus_4748#2      ------------------------------------------------------