These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGAAAATATATTGCCGGTGTAGAAACGTGAAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA] [+] EMBL BM608961 [CCGAAAATATATTGCCGGTGTAGAAACGTGAAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA] consensusID : consensus_4752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGA] [+] EMBL BM575263 [CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGA] [+] EMBL BX603387 [ CAAAGCTACAGCAACAGCCAATCCCCCGACGACACATCGAGGGGAATCCAGCGGCACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4752#0 CCGAAAATATATTGCCGGTGTAGAAACGTG-AAGCTACTGCTGTATTTTTCGGTGCATAA 59 consensus_4752#1 -----------------CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAA 43 * * *** **************************** consensus_4752#0 AGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCC 119 consensus_4752#1 AGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCC 103 ************************************************************ consensus_4752#0 CACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCAC 179 consensus_4752#1 CACAGCAACT----ATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCAC 159 ********** ********************************************** consensus_4752#0 ATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAG 239 consensus_4752#1 ATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAG 219 ************************************************************ consensus_4752#0 CTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGC 299 consensus_4752#1 CTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGC 279 ************************************************************ consensus_4752#0 TCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGT 359 consensus_4752#1 TCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGT 339 ************************************************************ consensus_4752#0 TCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGAT 419 consensus_4752#1 TCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGAT 399 ************************************************************ consensus_4752#0 CCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTG 479 consensus_4752#1 CCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTG 459 ************************************************************ consensus_4752#0 GTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGA 539 consensus_4752#1 GTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTG-AAGAAAGCGGTCAATGA 518 ****************************************** ***************** consensus_4752#0 GCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGC 599 consensus_4752#1 GCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGC 578 ************************************************************ consensus_4752#0 CAGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAA 659 consensus_4752#1 CAGCTTCGATCGGGCCC-GTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAA 637 ***************** ****************************************** consensus_4752#0 GCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA 707 consensus_4752#1 GCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGA----------- 674 ************************************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||