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Anopheles gambiae
cluster # 4758 cluster # 4758       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4758#0 length = 706 sequences # 2  
consensus_4758#1 length = 552 sequences # 1  

consensusID : consensus_4758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 706
fasta sequence
                              [CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA]

[+] EMBL BM600343             [CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGT                                                       ]
[+] EMBL BM587401             [                          ccgATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA]


>consensus_4758#0 CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGG GAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGA TAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGAT CGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAG AGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGG AACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTT TCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTA CTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAAC AGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATAC ATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAA ACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA



consensusID : consensus_4758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCTCTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG]

[+] EMBL BM579916             [CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCTCTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG]


>consensus_4758#1 CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGT GTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCT CTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCAC ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGA GATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATT TACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGT ATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAAT GAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAA CGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTC CCTTTTCTTTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4758#0      ------------------------------------------------------------
consensus_4758#1      CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGT 60
                                                                                  

consensus_4758#0      ------------------------------------------------------------
consensus_4758#1      GTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCT 120
                                                                                  

consensus_4758#0      -----------------CCGCGGACGCGTGGG-GAATAAGTGCAATAATGTGTCGTCTAC 42
consensus_4758#1      CTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCAC 180
                                       ***     *       ************************ **

consensus_4758#0      ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGA 102
consensus_4758#1      ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATG----- 235
                      *******************************************************     

consensus_4758#0      GAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGA 162
consensus_4758#1      -------AGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGA-- 286
                             ******* ******  ******************************** **  

consensus_4758#0      GAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTC 222
consensus_4758#1      -------------------AAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTC 327
                                         **************************** ************

consensus_4758#0      CTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACA 282
consensus_4758#1      CTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACA 387
                      ************************************************************

consensus_4758#0      GTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAA 342
consensus_4758#1      GTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAA 447
                      *********  **** ********************************************

consensus_4758#0      CTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACAT 402
consensus_4758#1      CTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACAT 507
                      *************************************************** ********

consensus_4758#0      TTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCG 462
consensus_4758#1      TTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG--------------- 552
                      *********************************************               

consensus_4758#0      CAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACAC 522
consensus_4758#1      ------------------------------------------------------------
                                                                                  

consensus_4758#0      TTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGA 582
consensus_4758#1      ------------------------------------------------------------
                                                                                  

consensus_4758#0      ATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGC 642
consensus_4758#1      ------------------------------------------------------------
                                                                                  

consensus_4758#0      ACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAA 702
consensus_4758#1      ------------------------------------------------------------
                                                                                  

consensus_4758#0      TACA 706
consensus_4758#1      ----
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)