These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA] [+] EMBL BM600343 [CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGT ] [+] EMBL BM587401 [ ccgATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA] consensusID : consensus_4758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCTCTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG] [+] EMBL BM579916 [CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCTCTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4758#0 ------------------------------------------------------------ consensus_4758#1 CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGT 60 consensus_4758#0 ------------------------------------------------------------ consensus_4758#1 GTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCT 120 consensus_4758#0 -----------------CCGCGGACGCGTGGG-GAATAAGTGCAATAATGTGTCGTCTAC 42 consensus_4758#1 CTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCAC 180 *** * ************************ ** consensus_4758#0 ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGA 102 consensus_4758#1 ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATG----- 235 ******************************************************* consensus_4758#0 GAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGA 162 consensus_4758#1 -------AGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGA-- 286 ******* ****** ******************************** ** consensus_4758#0 GAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTC 222 consensus_4758#1 -------------------AAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTC 327 **************************** ************ consensus_4758#0 CTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACA 282 consensus_4758#1 CTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACA 387 ************************************************************ consensus_4758#0 GTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAA 342 consensus_4758#1 GTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAA 447 ********* **** ******************************************** consensus_4758#0 CTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACAT 402 consensus_4758#1 CTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACAT 507 *************************************************** ******** consensus_4758#0 TTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCG 462 consensus_4758#1 TTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG--------------- 552 ********************************************* consensus_4758#0 CAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACAC 522 consensus_4758#1 ------------------------------------------------------------ consensus_4758#0 TTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGA 582 consensus_4758#1 ------------------------------------------------------------ consensus_4758#0 ATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGC 642 consensus_4758#1 ------------------------------------------------------------ consensus_4758#0 ACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAA 702 consensus_4758#1 ------------------------------------------------------------ consensus_4758#0 TACA 706 consensus_4758#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||