These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 885 fasta sequence [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGAGAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGTGGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACACACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAACCAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAACAGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGGTGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCGTCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCTTACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTTTAAATAACGCGTGCTCAACACTAAACCAAAAC--ACATTCACCTTACGCATTAGCGCTAGATCGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA] [+] EMBL BM585002 [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGAGAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGTGGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACACACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAACCAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAACAGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGGTGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCGTCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCTTACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTTTAAATAACGCGTGCTCAACACTAAACCAAAAC ACATTCACCTTACGCATTAGCGCTAGATCGGCACCTCCTGTGCGCCTGTTCGTAGGC ] [+] EMBL BM599552 [ ccGCGCTTTTCGAGACGGAAAGATTCTTATCGAACAGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGGTGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCGTCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCTTACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTTTAAATAACGCGTGCTCAACACTAAACCAAAACAAACATTCACCTTACGCATTAGCGCTAGATCGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA] consensusID : consensus_4772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CCGCCCACGCGTCCGATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTGCAACCGCGAACCAAGCGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAAATAAAATAAAAATAAAACCTCATACTCCTC] [+] EMBL BM625587 [CCGCCCACGCGTCCGATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTGCAACCGCGAACCAAGCGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAAATAAAATAAAAATAAAACCTCATACTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4772#0 CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGA 60 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 GAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGT 120 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 GGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACA 180 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 CACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAAC 240 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 CAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAAC 300 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 AGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGG 360 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 TGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCG 420 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 TCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCT 480 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 TACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTT 540 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 TAAATAACGCGTGCTCAACACTAAACCAAAACACATTCACCTTACGCATTAGCGCTAGAT 600 consensus_4772#1 ------------------------------------------------------------ consensus_4772#0 CGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCA 660 consensus_4772#1 -------------CCGCCCACGCGTC--CGATCCGCGCTGTGTGCGCTTGCCGCACGGCA 45 **** *** * ****************************** consensus_4772#0 GGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCT 720 consensus_4772#1 GGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCT 105 ************************************************************ consensus_4772#0 GCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTT 780 consensus_4772#1 GCAGGCGCTCCCAGCAAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTT 165 ****************** ***************************************** consensus_4772#0 TTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGT 840 consensus_4772#1 TTTTTTGTTTATAATTTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGT 225 *********************** ************** ********************* consensus_4772#0 CGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA--------------- 885 consensus_4772#1 CGGGAGCTGTTTATTCGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTG 285 ***************** *************************** consensus_4772#0 ------------------------------------------------------------ consensus_4772#1 CAACCGCGAACCAAGCGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAA 345 consensus_4772#0 ------------------------------ consensus_4772#1 ATAAAATAAAAATAAAACCTCATACTCCTC 375 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||