cluster # 4775

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Anopheles gambiae
cluster # 4775 cluster # 4775 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4775#0 length = 787 sequences # 2

consensus_4775#1 length = 540 sequences # 1

consensusID : consensus_4775#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 787
fasta sequence

                              [CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGATAACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCGATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACTTCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTACTGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCCGCCGTGTTACGCGAGCATCCCGGGCAATCAGACGCATCGGGGCCGGTCGATCTGGACGAGAAGACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAGAAGGGCAATCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCTGTGCCGGAAAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTAGACTCCAAGCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAA]

[+] EMBL BM579935             [CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGATAACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCGATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACTTCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTACTGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCCGCCGTGTTACGCGAGCATCCCGGGCAATCAGACGCATCGGGGCCGGTCGATCTGGACG                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM617807             [      ccgcccacGCGTCCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGATAACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCGATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACTTCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTACTGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCT GGGCCGCCGTGTTACGCGAGCATCCCGGGCAATCAGACGCATC GGGCCGGTCGATCTGGACGAGAAGACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAGAAGGGCAATCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCTGTGCCGGAAAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTAGACTCCAAGCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAA]




>consensus_4775#0
CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGAT
AACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCG
ATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACT
TCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTAC
TGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACT
CGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACC
TTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCCGC
CGTGTTACGCGAGCATCCCGGGCAATCAGACGCATCGGGGCCGGTCGATCTGGACGAGAA
GACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAGAAGGGCAA
TCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCTGTGCCGGA
AAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTAGACTCCAA
GCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGC
TAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACA
TACGCAA

consensusID : consensus_4775#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [GTAGCAGATCGGCACGAGGCGGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTATACTCCAAGCCNNGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTCGCGCAAGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGAGCTGAAAACGAAGCTGAACGCCATACAGAGCGGGCTCGATAAGATGGACCGTCTTCGCAGGGAGCGTCTCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAAATCTCGAGAAATTTGCCACCCTGGACGTAGAGGTGATGGTAAGCCCAAAGAAAACGATCGCCAGTCCTTCGAAGCTGCTGCGCACACCGACGAAAGATGCGTCGAGCTCGCCGGCTAACAATGTAACGCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCGACGGCCGGGACGCCCG]

[+] EMBL BX619692             [GTAGCAGATCGGCACGAGGCGGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTATACTCCAAGCCNNGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTCGCGCAAGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGAGCTGAAAACGAAGCTGAACGCCATACAGAGCGGGCTCGATAAGATGGACCGTCTTCGCAGGGAGCGTCTCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAAATCTCGAGAAATTTGCCACCCTGGACGTAGAGGTGATGGTAAGCCCAAAGAAAACGATCGCCAGTCCTTCGAAGCTGCTGCGCACACCGACGAAAGATGCGTCGAGCTCGCCGGCTAACAATGTAACGCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCGACGGCCGGGACGCCCG]




>consensus_4775#1
GTAGCAGATCGGCACGAGGCGGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTG
GCAGCATCGGTTGTATACTCCAAGCCNNGTTGAGTTTTCGCCCCGCAACAACCTAAACAA
TGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTCGCGCAAGCTCCAGCTGGGCAAGGACAA
AGATGCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGA
GCTGAAAACGAAGCTGAACGCCATACAGAGCGGGCTCGATAAGATGGACCGTCTTCGCAG
GGAGCGTCTCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAAATCTCGA
GAAATTTGCCACCCTGGACGTAGAGGTGATGGTAAGCCCAAAGAAAACGATCGCCAGTCC
TTCGAAGCTGCTGCGCACACCGACGAAAGATGCGTCGAGCTCGCCGGCTAACAATGTAAC
GCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCGACGGCCGGGACGCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4775#0      CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGAT 60
consensus_4775#1      ------------------------------------------------------------
                                                                                  

consensus_4775#0      AACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCG 120
consensus_4775#1      ------------------------------------------------------------
                                                                                  

consensus_4775#0      ATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACT 180
consensus_4775#1      ------------------------------------------------------------
                                                                                  

consensus_4775#0      TCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTAC 240
consensus_4775#1      --------------------------------------GTAGCAGATCGGCACGAGGC-- 20
                                                            *  ** *  **  *  ***   

consensus_4775#0      TGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACT-TGACGA-ACAGTTCACAGAA 298
consensus_4775#1      --GGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTATAC 78
                        * * * ***   * *  *   * *  ** ***** *  ** *   *  * *   * * 

consensus_4775#0      CTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAA 358
consensus_4775#1      TCCAAGCCNNGTTGAGTT----TTCGC-CCCGC-AACAACCTAAACAATGT-------GG 125
                        *    *  *  *** *    ****     ** *****    ***  *           

consensus_4775#0      CCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCC 418
consensus_4775#1      CCAAGGCGCCGACGAAGGCTAGCGTT-TCGCGCAAGCTCCAGCTGGGCAAGGACAAAGAT 184
                      **  *  **** **  **  *   *  * * **   *  *     ***   *     *  

consensus_4775#0      GCCGTGTTAC--GCGAGCATCCCGGGCAATCAGACGCA---TCGGGGCCGGTCG-ATCTG 472
consensus_4775#1      GCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGAGCTG 244
                      *** ***  *   **  *** *    *** * *  ***   **   *** * ** * ***

consensus_4775#0      GACGAGAAGACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAG 532
consensus_4775#1      AAAACGAAGCTGAACGCCATACAG--AGCGGGCTCGATAAGATGGACCGTCTTCGCAGGG 302
                       *   ****  *** **  * * *  *** * *  *   *    *      ****    *

consensus_4775#0      AAGGGCAATCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCT 592
consensus_4775#1      AGCGTC---------TCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAA 353
                      *  * *          *   * * **   ** * ** *  *** *  *  **  *     

consensus_4775#0      GTGCCGGAAAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTA 652
consensus_4775#1      ATCTCG----AGAAATTTGCCACCCTGG---ACGTAGAGGTGATGGTAAGCCCAAAGAAA 406
                       *  **    ****  ****  * * **   * ** **     *** *    *      *

consensus_4775#0      --GACTCCAAGCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGC 710
consensus_4775#1      ACGATCGCCAGTCCTTCGAAGCTGCTGCGCACACCGAC--GAAAGATGCGTCGAGCTCGC 464
                        **   * ** *  * **   * *  * * ** * **   **  *** * * *   ***

consensus_4775#0      CGACGAAGGCTAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCG 770
consensus_4775#1      CGGCTAACAATGTAACGCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCG 524
                      ** * **   *        *  ** *      *  *   * *  *           * **

consensus_4775#0      CTGACGGACATACGCAA 787
consensus_4775#1      ACGGCCGGGACGCCCG- 540
                        * * *  *  * *