These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 885 fasta sequence [CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATCGTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTTATGGGCGGCAATACTGCCGTTGGCGGTGGTCCCGGTGGATTCGGTGGTGGCAAACGCCCTCGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTTTTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAATTTGCATACTTTTTATTGCTA-TTTTTTCATAGCAATTTTCATTAGCATCTCTATGATGTTTTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTGAATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTTACAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTATAGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAACAAAAGATCCTGAATCAGCCAAAATAATTGTTGTAACAGGTCTTGTTTCCAACATTGTCAAGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTAAGATCTTCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTGTAGTTCCAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA] [+] EMBL BM653881 [CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATCGTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTTATGGGCGGCAATACTGCCGTTGGCGGTGGTCCCGGTGGATTCGGTGGTGGCAAACGCCCTCGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTTTTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAATTTGCATACTTTTTATTGCTA TTTTTTCATAGCAATTTTCATTAGCATCTCTATGATGTTTTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTGAATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTTACAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTATAGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAACAAAAGATCCTGAATCAGCCAAAATAAT ] [+] EMBL BM646808 [ ccgGTTTGTTTTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAATTTGCATACTTTTTATTGCTATTTTTTTCATAGCAATTCTCATTAGCATCTCTATGATGTTTTGAGCCCATTAAGGAACCGCGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTGAATTTAGCTCAAGATGGCAATGTCCC AAAAAAAAGCAACTAATATTGCTGTGTTACAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTATAGCAGCAGCGCTACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAACAAAAGATCCTGAATCAGCCAAAATAAGTGTTGTAACAGGTCTTGTTTCCAACATTGTCAAGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTAAGATCTTCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTGTAGTTCCAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA] consensusID : consensus_4781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [ATTGCCCGAGGTTTAGCTTGCTGCGCCGCAACCGAAGATGTGAACAAGACCACCGGGGCCGGTCCACTTATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGGCAAACTGCCCTCGCATGAATGGTCCTGCTGGTGGTTTCGGCAATGTGCCTCCCTTCAATCCTGAATGCCGGAGGCAATAACCTTAATAACAACCAAGCCATCCAGGACCTGCTGCGCCTGGCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGGTGNGCAATGTTGGTGGCAATCAGTGGCCCCAACCTGCGNGTGGCTGNGCTGTGCTGGCTGGTTCTTTCAATAATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAACAATGCCTTCGGTGGTGGTGACGGTGGCTTCGGCTGCCGGCGGCGNGCGTGCGGTGGTGGCGGCCGCAATATGAACAATCGTAATCAGAACATGAACTTCCTGCTGGTGGTAACCTGCAACAATCAGAACAACAACGTCGGTGGCAATCGAGGCCTCGGCAACAACAGCAACAACAATGCTGGTGGTAACATGA] [+] EMBL AL930105 [ATTGCCCGAGGTTTAGCTTGCTGCGCCGCAACCGAAGATGTGAACAAGACCACCGGGGCCGGTCCACTTATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGGCAAACTGCCCTCGCATGAATGGTCCTGCTGGTGGTTTCGGCAATGTGCCTCCCTTCAATCCTGAATGCCGGAGGCAATAACCTTAATAACAACCAAGCCATCCAGGACCTGCTGCGCCTGGCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGGTGNGCAATGTTGGTGGCAATCAGTGGCCCCAACCTGCGNGTGGCTGNGCTGTGCTGGCTGGTTCTTTCAATAATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAACAATGCCTTCGGTGGTGGTGACGGTGGCTTCGGCTGCCGGCGGCGNGCGTGCGGTGGTGGCGGCCGCAATATGAACAATCGTAATCAGAACATGAACTTCCTGCTGGTGGTAACCTGCAACAATCAGAACAACAACGTCGGTGGCAATCGAGGCCTCGGCAACAACAGCAACAACAATGCTGGTGGTAACATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4781#0 CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATC 60 consensus_4781#1 ---------------------------------------------ATT----GCCCGAGG 11 *** * *** consensus_4781#0 GTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTT 120 consensus_4781#1 TTTAGCTTGCTGCGCCGCAACC-GAAGATG-TGAACAAGACCACCGGGGCCGGTCCACTT 69 * ****************** ******* ***************************** consensus_4781#0 ATGGGCGGCAATACTGCCGTTGGC-GGTGGTCCCGGTGGATTCGGTGGTGGCAAAC-GCC 178 consensus_4781#1 ATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGGCAAACTGCC 129 ** ********************* ******************************* *** consensus_4781#0 CTCGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTT 238 consensus_4781#1 CTCGCATGAATGGTCCTGCTGGTGGT------------TTCGGCAATGTGCC---TCCCT 174 **************** ******** * * ** * * * * consensus_4781#0 TTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTT 298 consensus_4781#1 TCAATCCTGAATGCCGGAGG----CAATA-ACCTTAATAACAACCAAGCCATCCAGGACC 229 * * ** * * *** * ** ** ** **** * consensus_4781#0 TGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCG-TAATAGTTCTATTTCTCGTTAT 357 consensus_4781#1 TGCTGCGCCTGGCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGG 289 ** * ** *** * **** * * **** * ** consensus_4781#0 AAATTTGCATACTTTTTATTGCTATTTTTTCATAGCAATTTTCAT-TAGCATCTCTATGA 416 consensus_4781#1 -----TGNGCAATGTTGGTGGCAATCAGTG-GCCCCAACCTGCGNGTGGCTGNGCTGTGC 343 ** * * ** * ** ** * *** * * * ** ** ** consensus_4781#0 TGTTTTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAAT-GTGGTGAG 475 consensus_4781#1 TGGCTGGTTCTT-TCAATAATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAAC 402 ** * ** * * ** * * *** * ** ** ** * * ** * consensus_4781#0 AGTTGAATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTT 535 consensus_4781#1 AAT--GCCTTCGGTGGTGGTGACGGTGGCTTCGGCTGCCGGCGGCGNGCGT-GCGGTGGT 459 * * ** * * * ** * ** * ** * * ** *** * consensus_4781#0 A-CAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGG 594 consensus_4781#1 GGCGGCCGCAATATGAACAATCGT-------AATCAGAACATGAACTTCCTGC----TGG 508 * * ** * * * ** * * * * *** *** ** ** consensus_4781#0 TTGTATAGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTT 654 consensus_4781#1 TGGTA-ACCTGCAA--CAATCAGAAC----AACAACGTCGGTGGCAATCGA----GGCCT 557 * *** * * *** *** ** *** * *** * *** * * * consensus_4781#0 TGATAACAAAAGATCCTGAATCAGCCAAAATAATTGTTGTAACAGGTCTTGTTTCCAACA 714 consensus_4781#1 CGGCAACAACAG---------CAACAACAATGCTGGTGGTAACATGA------------- 595 * ***** ** ** * * *** * ** ****** * consensus_4781#0 TTGTCAAGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTA 774 consensus_4781#1 ------------------------------------------------------------ consensus_4781#0 AGATCTTCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTG 834 consensus_4781#1 ------------------------------------------------------------ consensus_4781#0 TAGTTCCAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA 885 consensus_4781#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||