These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence [AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTCGTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCATTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCCAAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGGCAGCTTAAAAGTGTGTTNACTGTTTTACTGGACTTAACTGACTTTGTTGCAACAGAAAACCATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAACGGAATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCG-CGCCGNCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCGTCGTATTATATCAAACTCAGTCGCGT] [+] EMBL AL932019 [AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTCGTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCATTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCCAAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGGCAGCTTAAAAGTGTGTTNACTGTTTTACTGGACTTAACTGACTTTGTTGCAACAGAAAACCATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAACGGAATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCG CGCCGN ] [+] EMBL BM643435 [ ccgGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCCAAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGGCAGCTTAAAAGTGTGTT A TGTTTTACTGGACTTAACTGA TTTG TGCAACAGAAAACCATGTGAATAACACTTAACTTATAAAAAA GAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAA GGAATAAAGTAATAAGGGGGGTCG TCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCGCCGCCGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCGTCGTATTATATCAAACTCAGTCGCGT] consensusID : consensus_4784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CCGCGGAGTACGATCAATGTAGCCCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGAACTTAACTGATTTGTGCAACAGAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAAGGAATTAAGTAATAAGGGGTCTCCCGTCGTCGTAAACGTGAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGCCGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATATCAAACTCCGTCGCGGTA] [+] EMBL BM619884 [CCGCGGAGTACGATCAATGTAGCCCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGAACTTAACTGATTTGTGCAACAGAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAAGGAATTAAGTAATAAGGGGTCTCCCGTCGTCGTAAACGTGAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGCCGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATATCAAACTCCGTCGCGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4784#0 AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTC 60 consensus_4784#1 ------------------------------------------------------------ consensus_4784#0 GTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCA 120 consensus_4784#1 ------------------------------------------------------------ consensus_4784#0 TTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCC 180 consensus_4784#1 ------------------------------------------------------------ consensus_4784#0 AAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGG 240 consensus_4784#1 -----------------------------------CCGCG-GAGTACGATCAAT-GTAGC 23 * * * *** * **** **** consensus_4784#0 CAG--CTTAAAAGTGTGTTN-ACT---GTTTTACTGGACTTAACTGACTTTGTTGCAACA 294 consensus_4784#1 CCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGAACTTAACTGATTT--GTGCAACA 81 * * ************** *** ********* ********** ** ******* consensus_4784#0 GAAAACCATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCT 354 consensus_4784#1 GAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAAAACACACACAACCAAAAAGCT 141 ******************* ******* *** *** ************************ consensus_4784#0 ATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACA 414 consensus_4784#1 ATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAAAACGAAAGCAACATACAAACA 201 ************************* ********************************** consensus_4784#0 AACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAA 474 consensus_4784#1 AACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAA 261 ******* **************************************************** consensus_4784#0 TAACGGAATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTC 534 consensus_4784#1 TAA-GGAATTAAGTAATAAGGGG------TCTCCCGTCGTCGTAAACGTGAAACAAATTC 314 *** ***** ************* **** ***** ********* ********** consensus_4784#0 GGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCGCGCCGNCGCCGCCAC 594 consensus_4784#1 GGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGC--CGCCGCCGCCAC 372 *************************************** ****** ** ********* consensus_4784#0 CGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGT 654 consensus_4784#1 CGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGT 432 ************************************************************ consensus_4784#0 CATCGTTCGTATTCGTCGCGTTCGCGTATTTATC--GTCGTATTATATCAAACTCAGTCG 712 consensus_4784#1 CATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATATCAAACTCCGTCG 492 ********************************** ******************* **** consensus_4784#0 CGT-- 715 consensus_4784#1 CGGTA 497 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||