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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1047 fasta sequence
[CCCGAGGTATTTTTGAGCACAGTATAAGGACGTTAATATTCTGTACACACACACTCAACACAACACAGCGGGAGGAAGTGTCTTTTTTGCAGATGAGACGAGGAGAACATATGATATGGGTGTAAGGCCCTGTTTTATAGGATAAGAGATTCACCTTTGTATGAAGTGAGTGAGAATGGGACAATTTTCTCCTGGCAAATACACAACAGCAAACACCAATTACGTGAACTAGAATGTAGTTAACTATATACAGCCCAATTTACATAAATATGTATGTAGGCGCAACAAAGGATACCAGCAAGAAATCGTAGCCTCTACCAGGCGAGGCTGTTGGTTGATGTGCGATTTTCGTACATTGCGGTGCGCACCGTATGCGAGCGATAACGGACNAATATTATGCCAAAAATGCCTCTTCTTCATAAAACTGTACTGTTCTACTATTATACTACTTACCCACTTTTTCCCAATTTGCTAACNGGTATTNCCGTACTGACTNNACTNCGTCGTGTATAGAAACTCAGCACTTAGTACCAGTCGTTCTTAACTTTATCTCTCTTNTGCGTGTGCGAACATTCGATGTTCAAACTCAGAGTGAGCACCACGTCCCTGCATCACTAAGACCCGGTATTTTCAAACGGCAGGCAACNGTTTAGGAATTTTAGAAGCCCGTTCCCGGACCACGCAACATAGTTATATTAATCCAGGCTGGCCTTGNTGGACACTCGCGTGGTTCATTCTGAAACCCGGNNCTCTTCGGATGCTACATTATGCCACACACNNTGCNGGNGGTNGCTACCACGGGACTGGCGGGACCAAGNCAACAGGACTNCNCTTTACCCCCCCTTTAGGTAGGCCGGCGCCCACACTCGGCACGCTCTCNNAGCCATCTCAAAACGAAACTCATCCGCAACCNCACTCCCAATCCAACCGCCCCCCANAAACNTTACCGTGCGNACACGGGAANCCCAAACCCACGAAAACAGTACNCCGTCCCTTAACACATCNCAGGGCCCANTCCACCAACTCAGCAGCANACGGCAAGCAATG]
[+] EMBL AL931358 [CCCGAGGTATTTTTGAGCACAGTATAAGGACGTTAATATTCTGTACACACACACTCAACACAACACAGCGGGAGGAAGTGTCTTTTTTGCAGATGAGACGAGGAGAACATATGATATGGGTGTAAGGCCCTGTTTTATAGGATAAGAGATTCACCTTTGTATGAAGTGAGTGAGAATGGGACAATTTTCTCCTGGCAAATACACAACAGCAAACACCAATTACGTGAACTAGAATGTAGTTAACTATATACAGCCCAATTTACATAAATATGTATGTAGGCGCAACAAAGGATACCAGCAAGAAATCGTAGCCTCTACCAGGCGAGGCTGTTGGTTGATGTGCGATTTTCGTACATTGCGGTGCGCACCGTATGCGAGCGATAACGGACNAATATTATGCCAAAAATGCCTCTTCTTCATAAAACTGTACTGTTCTACTATTATACTACTTACCCACTTTTTCCCAATTTGCTAACNGGTATTNCCGTACTGACTNNACTNCGTCGTGTATAGAAACTCAGCACTTAGTACCAGTCGTTCTTAACTTTATCTCTCTTNTGCGTGTGCGAACATTCGATGTTCAAACTCAGAGTGAGCACCACGTCCCTGCATCACTAAGACCCGGTATTTTCAAACGGCAGGCAACNGTTTAGGAATTTTAGAAGCCCGTTCCCGGACCACGCAACATAGTTATATTAATCCAGGCTGGCCTTGNTGGACACTCGCGTGGTTCATTCTGAAACCCGGNNCTCTTCGGATGCTACATTATGCCACACACNNTGCNGGNGGTNGCTACCACGGGACTGGCGGGACCAAGNCAACAGGACTNCNCTTTACCCCCCCTTTAGGTAGGCCGGCGCCCACACTCGGCACGCTCTCNNAGCCATCTCAAAACGAAACTCATCCGCAACCNCACTCCCAATCCAACCGCCCCCCANAAACNTTACCGTGCGNACACGGGAANCCCAAACCCACGAAAACAGTACNCCGTCCCTTAACACATCNCAGGGCCCANTCCACCAACTCAGCAGCANACGGCAAGCAATG]
consensusID : consensus_4794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[CACACAACTCAACACCACACAGCAGGAGGAAGTGTCTTTTTGCAGATGAGACGAGGAGAACATTGATATGGGTGTAAGGCCCTGTTTTATAGGATAAGAGATTCACCTTTGTATGAAGTGAGTGAGAATGGGACAATTTTCTCCTGCAAATCACAACAGCAAACACCAACTAGATGAACTAGAATGTAGTTAACTATATACAGCCCAATTTACATAAATATGTATGTAGGCGCAACAAAGGATACCCGCAGAAATCGTAGCCTCTACTAGGCGAGGTGTGGTGAGGCGATTTTCGTAGATTGCGGTGCGCACCGTATGCGAGCGATAAGGACAAATATTATGCCAAAAATGCCTCTTCTTCATAAAGTGTACTGTTCTACTATTATACTACTTACCCACTTTTTCCCAATTTGCTAAAGGTATTTTGTATGATTTATTTGTTGTGTATAGAAATCAGCATTAGTAGCAGTCGTTCTTAATTTATCTCTATTTTTGCGTGTGCGAACATTCGATGTTAAATCAGAGTGAGCACCACGTCCCTGCACCACTAAACGGTATTTTCAAACGGAAGGAACAGTTAGGAATTTTAGAACCCGCCCCCGGACCAGCAAAATATATTATCCAGTGTTTGTGGAATTGTGTGTTATTTGTAACCGTTTTCGGTGCTCTTTGCACAAAGGGGTGTTTGGTGCGGCCAGCAAGCTCCTTC]
[+] EMBL BX620748 [CACACAACTCAACACCACACAGCAGGAGGAAGTGTCTTTTTGCAGATGAGACGAGGAGAACATTGATATGGGTGTAAGGCCCTGTTTTATAGGATAAGAGATTCACCTTTGTATGAAGTGAGTGAGAATGGGACAATTTTCTCCTGCAAATCACAACAGCAAACACCAACTAGATGAACTAGAATGTAGTTAACTATATACAGCCCAATTTACATAAATATGTATGTAGGCGCAACAAAGGATACCCGCAGAAATCGTAGCCTCTACTAGGCGAGGTGTGGTGAGGCGATTTTCGTAGATTGCGGTGCGCACCGTATGCGAGCGATAAGGACAAATATTATGCCAAAAATGCCTCTTCTTCATAAAGTGTACTGTTCTACTATTATACTACTTACCCACTTTTTCCCAATTTGCTAAAGGTATTTTGTATGATTTATTTGTTGTGTATAGAAATCAGCATTAGTAGCAGTCGTTCTTAATTTATCTCTATTTTTGCGTGTGCGAACATTCGATGTTAAATCAGAGTGAGCACCACGTCCCTGCACCACTAAACGGTATTTTCAAACGGAAGGAACAGTTAGGAATTTTAGAACCCGCCCCCGGACCAGCAAAATATATTATCCAGTGTTTGTGGAATTGTGTGTTATTTGTAACCGTTTTCGGTGCTCTTTGCACAAAGGGGTGTTTGGTGCGGCCAGCAAGCTCCTTC]
consensusID : consensus_4794#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[CACGAATTCGCCACGAGGTGTNATCGTAGCCTCTACTANGCGACGTGTNNGGTTAAGGCGATTTCCGTAGATATGCGGTGCGCACCGGATNCCGAACGATAAGGNCCAATTATTTATTGNCCAAAAATGNCTCTTCTTCCATAAAGTGTACTGTTCTACTATTTATACTACTTACCCACTTTTTCCCAANTTTGCGTAAAGGTATTTTGTCATGAGTTTCATTCTGTGTGGTGGTATAGAAAGTCCAGGCCATTAGTAGGCCAGGGACGGTTCTTAAATTTATCTCGTAGTAGNTATTTGCGGTGTGCGGAAAGCATTCGAGTGTTAAATCACGAGGTTGAGCACCACGGTTCCTGGACCACTAAACGGTATTTTCAAACGGGNAGTGAACCAGGTAGGAATTTTAGAACCCGCGCCCCGGAGCCAGCAAAGATATATTATCCACGTGTTTGTCGGAATTGTGTGTTATTTGTAACCGTTTTCAGGTGCTCTTTGCACAAAGGGGTGTTATGGTGCGGCCAGGCAAGCTCCTTACCCTTGTGCGGTTAATGTNGTATAGNTATTATAAAGGCTTCGTGCTTATTAGTGACGCCGAGATCGTGCACAGGGAGCCAACATGGAAAGACACGCTTACCNAAAAGGCCAGGTGAACTATTTGGGGAGGTAGATGGCAAACTCTCTACCAGCAAGTCGATNCGG]
[+] EMBL BX468987 [CACGAATTCGCCACGAGGTGTNATCGTAGCCTCTACTANGCGACGTGTNNGGTTAAGGCGATTTCCGTAGATATGCGGTGCGCACCGGATNCCGAACGATAAGGNCCAATTATTTATTGNCCAAAAATGNCTCTTCTTCCATAAAGTGTACTGTTCTACTATTTATACTACTTACCCACTTTTTCCCAANTTTGCGTAAAGGTATTTTGTCATGAGTTTCATTCTGTGTGGTGGTATAGAAAGTCCAGGCCATTAGTAGGCCAGGGACGGTTCTTAAATTTATCTCGTAGTAGNTATTTGCGGTGTGCGGAAAGCATTCGAGTGTTAAATCACGAGGTTGAGCACCACGGTTCCTGGACCACTAAACGGTATTTTCAAACGGGNAGTGAACCAGGTAGGAATTTTAGAACCCGCGCCCCGGAGCCAGCAAAGATATATTATCCACGTGTTTGTCGGAATTGTGTGTTATTTGTAACCGTTTTCAGGTGCTCTTTGCACAAAGGGGTGTTATGGTGCGGCCAGGCAAGCTCCTTACCCTTGTGCGGTTAATGTNGTATAGNTATTATAAAGGCTTCGTGCTTATTAGTGACGCCGAGATCGTGCACAGGGAGCCAACATGGAAAGACACGCTTACCNAAAAGGCCAGGTGAACTATTTGGGGAGGTAGATGGCAAACTCTCTACCAGCAAGTCGATNCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4794#0 CCCGAGGTATTTTTGAGCACAGTATAAGGACGTTAATATTCTGTACACACACACTCAACA 60
consensus_4794#1 ---------------------------------------------CACACA-ACTCAACA 14
consensus_4794#2 ------------------------------------------------------------
consensus_4794#0 CAACACAGCGGGAGGAAGTGTCTTTTTTGCAGATGAGACGAGGAGAACATATGATATGGG 120
consensus_4794#1 CCACACAGCAGGAGGAAGTGTCTTTTT-GCAGATGAGACGAGGAGAACAT-TGATATGGG 72
consensus_4794#2 ------------------------------------------------------------
consensus_4794#0 TGTAAGGCCCTGTTTTATAGGATAAGAGATTCACCTTTGTATGAAGTGAGTGAGAATGGG 180
consensus_4794#1 TGTAAGGCCCTGTTTTATAGGATAAGAGATTCACCTTTGTATGAAGTGAGTGAGAATGGG 132
consensus_4794#2 ------------------------------------------------------------
consensus_4794#0 ACAATTTTCTCCTGGCAAATACACAACAGCAAACACCAATTACGTGAACTAGAATGTAGT 240
consensus_4794#1 ACAATTTTCTCCTG-CAAAT-CACAACAGCAAACACCAACTAGATGAACTAGAATGTAGT 190
consensus_4794#2 ------------------------------------------------------------
consensus_4794#0 TAACTATATACAGCCCAATTTACATAAATATGTATGTAGGCGCAACAAAGGATACCAGCA 300
consensus_4794#1 TAACTATATACAGCCCAATTTACATAAATATGTATGTAGGCGCAACAAAGGATACCCGCA 250
consensus_4794#2 --------------------------------CACGAATTCGCCACGAGGTGTN------ 22
* * * *** ** * * *
consensus_4794#0 AGAAATCGTAGCCTCTACCAGGCGAGGCTGTTGGTTGATGTGCGATTTTCGTACAT-TGC 359
consensus_4794#1 -GAAATCGTAGCCTCTACTAGGCGAGGT-----GTGGTGAGGCGATTTTCGTAGAT-TGC 303
consensus_4794#2 ----ATCGTAGCCTCTACTANGCGACGTGTNNGGTTAAG--GCGATTTCCGTAGATATGC 76
************** * **** * ** ******* **** ** ***
consensus_4794#0 GGTGCGCACCGTATGC-GAGCGATAACGGACNAATATT-AT--GCCAAAAATGCCTCTTC 415
consensus_4794#1 GGTGCGCACCGTATGC-GAGCGATAA-GGACAAATATT-AT--GCCAAAAATGCCTCTTC 358
consensus_4794#2 GGTGCGCACCGGATNCCGAACGATAAGGNCCAATTATTTATTGNCCAAAAATGNCTCTTC 136
*********** ** * ** ****** * * * **** ** ********* ******
consensus_4794#0 TTCATAAAACTGTACTGTTCTACTATT-ATACTACTTACCCACTTTTTCCCAATTT-GCT 473
consensus_4794#1 TTCATAAAG-TGTACTGTTCTACTATT-ATACTACTTACCCACTTTTTCCCAATTT-GCT 415
consensus_4794#2 TTCCATAAAGTGTACTGTTCTACTATTTATACTACTTACCCACTTTTTCCCAANTTTGCG 196
*** ** ***************** ************************* ** **
consensus_4794#0 AACNGGTATTNCCGTACTGACTNNA--CTNCGTCGTG-TATAGAAACTC--AGCACTTAG 528
consensus_4794#1 AA-AGGTATTTT-GTA-TGATTTA----TTTGTTGTG-TATAGAAA-TC--AGCA-TTAG 463
consensus_4794#2 TAAAGGTATTTTGTCATGAGTTTCATTCTGTGTGGTGGTATAGAAAGTCCAGGCCATTAG 256
* ****** * * * ** *** ******** ** ** ****
consensus_4794#0 TA--CCAG---TCGTTCTTAACTTTATCTCT-------CTTNTGCG-TGTGCGAA---CA 572
consensus_4794#1 TA--GCAG---TCGTTCTTAA-TTTATCTCTA------TTTTTGCG-TGTGCGAA---CA 507
consensus_4794#2 TAGGCCAGGGACGGTTCTTAAATTTATCTCGTAGTAGNTATTTGCGGTGTGCGGAAAGCA 316
** *** ******** ******** * **** ****** * **
consensus_4794#0 TTCGA-TGTTCAAACTCAGAGT-GAGCACCACG-TCCCTGCATCACTAAGACCCGGTATT 629
consensus_4794#1 TTCGA-TGTT--AAATCAGAGT-GAGCACCACG-TCCCTGCACCACTAAA---CGGTATT 559
consensus_4794#2 TTCGAGTGTTAAATCACGAGGTTGAGCACCACGGTTCCTGGACCACTAAA---CGGTATT 373
***** **** * * ** ********** * **** * ****** *******
consensus_4794#0 TTCAAACGGCAGGC-AACNGTTTAGGAATTTTAGAAGCCCGTTCCCGGACCACGCAACAT 688
consensus_4794#1 TTCAAACGGAAGG--AACAGTT-AGGAATTTTAGAA-CCCGCCCCCGGACCA-GCAAAAT 614
consensus_4794#2 TTCAAACGGGNAGTGAACCAGGTAGGAATTTTAGAACCCGCGCCCCGGAGC---CAGCAA 430
********* * *** ************* ** ****** * ** *
consensus_4794#0 AGTTATATTAATCCAGGCTGGCCTTGNTGGACACTCGCGTGGTTCATTCTGAAACCC-GG 747
consensus_4794#1 A----TATTA-TCCAG-----TGTTTGTGGAATTGTGTGTTATTTGTAACCGTTTTC-GG 663
consensus_4794#2 AGATATATTA-TCCACGT---GTTTGTCGGAATTGTGTGTTATTTGTAACCGTTTTCAGG 486
* ***** **** ** *** * ** ** * * **
consensus_4794#0 NNCTCTTCGGATGCTACATTATGCCACACACNNTGCNGGNGGTNGCTACCACGGGACTGG 807
consensus_4794#1 TGCTCTTTGCACAAAGGGGTGTTTGGTGCGGCCAGCAAGCTCCTTC-------------- 709
consensus_4794#2 TGCTCTTTGCACAAAGGGGTGT------TATGGTGCGGCCAGGCAAGCTCCTTACCCTTG 540
***** * * * * **
consensus_4794#0 CGGGACCAAGNCAACAGGACTNCNCTTTACCCCCCCTTTAGGTAGGCCGGCGCCCACACT 867
consensus_4794#1 ------------------------------------------------------------
consensus_4794#2 TGCGGTTAATGTNGTATAGNTATTATAAAGGCTTCGTGCTTATTAGT-GACGCCGAGATC 599
consensus_4794#0 CGGCACGCTCTCNNAGCCATCTCAAAACGAAACTCATCCGCAACCNCACTCCCAATCCAA 927
consensus_4794#1 ------------------------------------------------------------
consensus_4794#2 GTGCACA----GGGAGCCAACATGGAAAGACACGCTT-----------------ACCNAA 638
consensus_4794#0 CCGCCCCCCANAAACNTTACCGTGCGNACACGGGAANCCCAAACCCACGAAAACAGTACN 987
consensus_4794#1 ------------------------------------------------------------
consensus_4794#2 AAGGCCAGGTGAACTATTTGGGGAGGTAGATGGCAAACTCTCTACCAGCAAGTCGATNCG 698
consensus_4794#0 CCGTCCCTTAACACATCNCAGGGCCCANTCCACCAACTCAGCAGCANACGGCAAGCAATG 1047
consensus_4794#1 ------------------------------------------------------------
consensus_4794#2 G----------------------------------------------------------- 699
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||