These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCTTAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAGTTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATATGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCAATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCTCCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGATCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATACAGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGGATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAAGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG] [+] EMBL BM638621 [CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCTTAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAGTTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATATGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCAATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCTCCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGATCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATACAGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGGATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAAGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG] consensusID : consensus_4798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGCGGACGCGTGGGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACTATCGCCTGTGTGGTACTGAACTACCGTGAGGTTGGGGAAGGCAAAAGTAAAAAGATCGCCAAACGGCAAGCAGCACAGCGGATGTGGCAGCGGCTGCAGGACCAACCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAAGGCAATGAGGAGAACTTAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCCGACATAGCGAAGGAGCAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGCAATGGTAAATTCCAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGTAGTGGCAATTCAATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCTCAAAATAATGACCAAACCTTAAGCGGGTTCAATAGTAATTGCGAGTACCGCGTTTACTAGTCCTTGCCGGGATTCGGAGTGCGCTACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGCGCGCGCGCGCGTTTTCGGTT] [+] EMBL BM593942 [CCGCGGACGCGTGGGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACTATCGCCTGTGTGGTACTGAACTACCGTGAGGTTGGGGAAGGCAAAAGTAAAAAGATCGCCAAACGGCAAGCAGCACAGCGGATGTGGCAGCGGCTGCAGGACCAACCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAAGGCAATGAGGAGAACTTAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCCGACATAGCGAAGGAGCAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGCAATGGTAAATTCCAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGTAGTGGCAATTCAATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCTCAAAATAATGACCAAACCTTAAGCGGGTTCAATAGTAATTGCGAGTACCGCGTTTACTAGTCCTTGCCGGGATTCGGAGTGCGCTACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGCGCGCGCGCGCGTTTTCGGTT] consensusID : consensus_4798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [GCCCCGAGGTNNGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTGTGTGGTATTGAACTACC] [+] EMBL AL931772 [GCCCCGAGGTNNGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTGTGTGGTATTGAACTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4798#0 CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCT 60 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 ---------------------------------CCGCGGACGCGTGGGTGTATGGCCCGC 27 consensus_4798#0 TAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAG 120 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 CGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAG 87 consensus_4798#0 TTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATA 180 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 TTCACT--ATCGCCTGTGTGGTACTGAA-----CTACCGTGAGGTTGGGGAAGGCAAAAG 140 consensus_4798#0 TGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCA 240 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 TAAAA--AGATCGCCAAACGGCAAGCAGCACAGCGGATGTGGCAGCGGCTGCAGGACCAA 198 consensus_4798#0 ATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCT 300 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 --CCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAAGGCAATGAGGAGAACT 256 consensus_4798#0 CCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGA 360 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 TAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCCGACATAGCGAAGG-AG 315 consensus_4798#0 TCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATAC 420 consensus_4798#2 ------------------------------------------------------------ consensus_4798#1 CAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGCAATGGTA---AATTC 372 consensus_4798#0 AGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGG 480 consensus_4798#2 ------------------------------------------------------GCCCCG 6 consensus_4798#1 CAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGTAGTGGCAATTCA 432 consensus_4798#0 ATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGA 540 consensus_4798#2 AGGTNN--GGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGA 64 consensus_4798#1 ATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCT-CAAAATAATGAC 491 * ** ** * * **** * * ** ***** * consensus_4798#0 TAGACAA-GCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGT-CCA 598 consensus_4798#2 TAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGT-CCA 123 consensus_4798#1 CAAACCT--TAAGCGGGTTCAATAGTAATTGCGAGTACCGC-GTTTACTAGTCCTTGCCG 548 * ** * **** ** *** * * * * **** ** *** * * * ** consensus_4798#0 CAAGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGAC 658 consensus_4798#2 CAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGAC 183 consensus_4798#1 GGATTCGGAGTGCGC-----TACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGCGCG 603 * * ** ** ******* * ** ** ** * ** ** consensus_4798#0 CGGCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG------------------ 700 consensus_4798#2 CGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCCAAC 243 consensus_4798#1 CGCGCGCGTTTTCGGTT------------------------------------------- 620 ** **** * consensus_4798#0 ------------------------------------------------------------ consensus_4798#2 GTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTGTGT 303 consensus_4798#1 ------------------------------------------------------------ consensus_4798#0 -------------- consensus_4798#2 GGTATTGAACTACC 317 consensus_4798#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||