These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4819#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [CCGGTGTTGTGGTCGGTCGTCCGGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTACACGTGGAACAGCTGACCGAGTGTGTGTGTGTGTGGTTTTGTTCTTAATAAGTAGCATCGTTTTAAATAAAATCACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTAACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAGAAGGAAAAAAAAACAACAACAAATCAGTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTACGCGGTATTCCCCCCTCACGTCATCTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAGTATTTTCCGTAAACGGTTCCTAGATACTACAACTGCTACTCGTCCTTCTCGAGACAACGGTTTCGGTCACATCTAGTCCCCCGGCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGTCGCCCGAATACCCGAAAAGCGGTGCGGCC] [+] EMBL BM639094 [CCGGTGTTGTGGTCGGTCGTCCGGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTACACGTGGAACAGCTGACCGAGTGTGTGTGTGTGTGGTTTTGTTCTTAATAAGTAGCATCGTTTTAAATAAAATCACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTAACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAG ] [+] EMBL BM653265 [ ccGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTACACGTGGAACAGCTGACCGA GTGTGTGTGTGGTTTTGTTCTTTATTAGTAGCATCGTTTTAAATAAAAACACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTTACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCAAGAAGGAAAAAAAAACAACAACAAATCAGTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTACGCGGTATTCCCCCCTCACGTCATCTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAGTATTTTCCGTAAACGGTTCCTAGATACTACAACTGCTACTCGTCCTTCTCGAGACAACGGTTTCGGTCACATCTAGTCCCCCGGCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGTCGCCCGAATACCCGAAAAGCGGTGCGGCC] consensusID : consensus_4819#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACGGTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGTTTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCTTGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGGAAGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCTAATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTACACAGTGAAGTAACACCAA] [+] EMBL AL934547 [AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACGGTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGTTTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCTTGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGGAAGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCTAATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTACACAGTGAAGTAACACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4819#0 ------------------------------------------------------------ consensus_4819#1 AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACG 60 consensus_4819#0 ------------------------------------------------------------ consensus_4819#1 GTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGT 120 consensus_4819#0 ------------------------------------------------------------ consensus_4819#1 TTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCT 180 consensus_4819#0 -----------CCGGTGTTGTGGTCG----GTCGTCCGGGTTCG--GTTTCACAGTGAGT 43 consensus_4819#1 TGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGG- 239 * *** *** * * ***** * * * * ** * * * consensus_4819#0 GCACACCAGTGGGTTACACGTG-GAACAGCTGACCGAGTGTG---TGTGTGTGTGGTTTT 99 consensus_4819#1 AAGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCT 299 ** * ** ** * * * * *** ** * *** ** * * consensus_4819#0 GTTCTTAATAAGTAGCATCGTTTTAAATAAAATCACCCCGATCAGGAAGTTCAAA-AGGA 158 consensus_4819#1 AATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGA 359 * * * ** * * * * * *** * **** **** consensus_4819#0 AGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTC 218 consensus_4819#1 AGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTC 419 ************************************************************ consensus_4819#0 TTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGC 278 consensus_4819#1 TTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGC 479 ******************************************************** *** consensus_4819#0 AAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGA 338 consensus_4819#1 AAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGA 539 ************************************************************ consensus_4819#0 ATTATTAAA-AGTGAAGTAACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAGAAG 397 consensus_4819#1 ATTATTACACAGTGAAGTAACACCAA---------------------------------- 565 ******* * **************** consensus_4819#0 GAAAAAAAAACAACAACAAATCAGTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTAC 457 consensus_4819#1 ------------------------------------------------------------ consensus_4819#0 GCGGTATTCCCCCCTCACGTCATCTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAG 517 consensus_4819#1 ------------------------------------------------------------ consensus_4819#0 TATTTTCCGTAAACGGTTCCTAGATACTACAACTGCTACTCGTCCTTCTCGAGACAACGG 577 consensus_4819#1 ------------------------------------------------------------ consensus_4819#0 TTTCGGTCACATCTAGTCCCCCGGCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGT 637 consensus_4819#1 ------------------------------------------------------------ consensus_4819#0 CGCCCGAATACCCGAAAAGCGGTGCGGCC 666 consensus_4819#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||