cluster # 4821

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Anopheles gambiae
cluster # 4821 cluster # 4821 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4821#0 length = 1007 sequences # 2

consensus_4821#1 length = 603 sequences # 1

consensusID : consensus_4821#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1007
fasta sequence

                              [CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTCTCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTATGTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAGGCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTGCTGCTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAATGAGGCCAAACTGTTGGCGATCG-TAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTGCCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCCTTTCTGCTCTGTCTCGG-GGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATACGCGAAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACGCCATCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGGAGAGGGTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAAGCACTTCGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCGGCAGCGGCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGTTGGGCGGCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGACAACAATCGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG]

[+] EMBL BM655968             [CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTCTCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTATGTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAGGCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTGCTGCTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAATGAGGCCAAACTGTTGGCGATCG TAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTGCCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCCTTTCTGCTCTGTCTCGG GGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATACGCGAAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACG                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS094TB             [                                                                                                                                                                                                                                                                                                                                                                                        TCCATCGAACGGATCCAAACCAGCCGGGCCCGTTGGCCAGAATGAGGCCAAACTGTTGGCGATCGCTAGTGCTCGGATTCGGCAGCTTCCTGTGCGGCGTACTGCCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACCCTCTCCTTTCTGCTCTGTCTAGGCAGCGGGCGTCCTGCTGGCCACCGCCATCGTGCACATGCTGCCGGAGATACGCGAA  GCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACGCCATCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGGAGAGGGTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAAGCACTTCGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCGGCAGCGGCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGTTGGGCGGCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGACAACAATCGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG]




>consensus_4821#0
CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTC
TCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTAT
GTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAG
GCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGA
ACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTGCTG
CTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGAG
CACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAATG
AGGCCAAACTGTTGGCGATCGTAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTGC
CGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCCTTTCTGCTCT
GTCTCGGGGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATACGCG
AAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACGCCA
TCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGGAGAGG
GTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAAGCACTT
CGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCGGCAGCG
GCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGTTGGGCG
GCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGACAACAAT
CGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG

consensusID : consensus_4821#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CGACCCACGCGTCCGCGATTACAGCGTGCGCGCGCTATCGCCGTTCGATTAGTTGAGCCAAAAGTTGAAAAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTACCTAAAACACCGTTTCAATGTTGAAAAAGTGTATCATGCAGTGTGCTACTTATTTTTTTTTGCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGTTCCGTTCTCACGGCCGTTAAATGGTTGCACAAACACCGTTGGTCTGTTTTTGAACTTCCTGGGCTCCTGCTGGATGGACAATGTTTGCGGAGCGTTTGTTATCGTACATGTTAACACTCTAAACAGCAACAAAACATGTAGAGTCGATTTCGAACCGAGCGACCGAAACCCGACCCTGAGGAGCAGCCAGGCAGGTGTCTTTACACATTTGCAAACGAAATGCTACACAACGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGCAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCAGTTGCTGCTACTCACACACACACACGCTGGATGGTGTTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACG]

[+] EMBL BM639737             [CGACCCACGCGTCCGCGATTACAGCGTGCGCGCGCTATCGCCGTTCGATTAGTTGAGCCAAAAGTTGAAAAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTACCTAAAACACCGTTTCAATGTTGAAAAAGTGTATCATGCAGTGTGCTACTTATTTTTTTTTGCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGTTCCGTTCTCACGGCCGTTAAATGGTTGCACAAACACCGTTGGTCTGTTTTTGAACTTCCTGGGCTCCTGCTGGATGGACAATGTTTGCGGAGCGTTTGTTATCGTACATGTTAACACTCTAAACAGCAACAAAACATGTAGAGTCGATTTCGAACCGAGCGACCGAAACCCGACCCTGAGGAGCAGCCAGGCAGGTGTCTTTACACATTTGCAAACGAAATGCTACACAACGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGCAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCAGTTGCTGCTACTCACACACACACACGCTGGATGGTGTTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACG]




>consensus_4821#1
CGACCCACGCGTCCGCGATTACAGCGTGCGCGCGCTATCGCCGTTCGATTAGTTGAGCCA
AAAGTTGAAAAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTAC
CTAAAACACCGTTTCAATGTTGAAAAAGTGTATCATGCAGTGTGCTACTTATTTTTTTTT
GCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGTTCCGTTCTCACGG
CCGTTAAATGGTTGCACAAACACCGTTGGTCTGTTTTTGAACTTCCTGGGCTCCTGCTGG
ATGGACAATGTTTGCGGAGCGTTTGTTATCGTACATGTTAACACTCTAAACAGCAACAAA
ACATGTAGAGTCGATTTCGAACCGAGCGACCGAAACCCGACCCTGAGGAGCAGCCAGGCA
GGTGTCTTTACACATTTGCAAACGAAATGCTACACAACGCTTGAAGGAAGATAACGAACA
TCCGAAGGTCCGCAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCAGTTGCTGCTA
CTCACACACACACACGCTGGATGGTGTTGGCGAGCGACTTAGTATAACCGGGAACCGAGC
ACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4821#0      CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTC 60
consensus_4821#1      ------------------------------------------------------------
                                                                                  

consensus_4821#0      TCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTAT 120
consensus_4821#1      ------------------------------------------------------------
                                                                                  

consensus_4821#0      GTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAG 180
consensus_4821#1      ------------------------------------------------------------
                                                                                  

consensus_4821#0      GCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGA 240
consensus_4821#1      ------------------------------------------------------------
                                                                                  

consensus_4821#0      ACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTG-CT 299
consensus_4821#1      ----------------------------------------------CGACCCACGCGTCC 14
                                                                    *   ****  * * 

consensus_4821#0      GCTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGA 359
consensus_4821#1      GCGATTACAGCGTGCGCGC-----GCTATCGCCGTTCGA-TTAGTTGAGCCAAAAGTTGA 68
                      ** * * *  *   * * *     * *** * **  *** *****  * **   *   **

consensus_4821#0      GCACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAAT 419
consensus_4821#1      A-AAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTACCTAAAAC 127
                        *  *    * * *  *  *   *  * * *  **    *         *  * * ** 

consensus_4821#0      GAGGCCAAACTGTTGGCGATCGTAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTG 479
consensus_4821#1      ACCGTTTCAATGTTGAAAA--------------------AGTGTATCATGCAGTGTGCTA 167
                         *    * *****   *                    **  *    *** * ***** 

consensus_4821#0      CCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCC--TTTCTGC 537
consensus_4821#1      CTTATTTTTTTTTGCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGT 227
                      *  ** *   * * * *  *  *    *    ** *    * **  ** *   ***  * 

consensus_4821#0      TCTGT-CTCGGGGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATA 596
consensus_4821#1      TCCGTTCTCACGGCCGTTAAATGGTTG--CACAAACACCGTTGGTCTGTTTTTGAACTTC 285
                      ** ** ***  *** *       * **  ***   ** ***     ** *   * *  * 

consensus_4821#0      CGCGAAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTAC 656
consensus_4821#1      CTGG--GCTCCTGCTGGAT----GGACAATGT---TTGCGGAGCGTTTGTTATCGTACAT 336
                      *  *  ** *  *  *  *    *** * ***   **** * *  *** *  ** *  * 

consensus_4821#0      GCCATCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGG- 715
consensus_4821#1      G---TTAACACTCTAA-ACAGCAACAAAACAT--GTAGAGTCGATTTCGAACCGAGCGAC 390
                      *   *  **   **   * **        ***   * **  ****   * *  *   *  

consensus_4821#0      -AGAGGGTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAA 774
consensus_4821#1      CGAAACCCGACCCTGAGGAGCAGCCAGGCAGGTGTCTTTACACATTTGCAAACG----AA 446
                         *    ** *    ** * * *  * **** *   *     *    *  ***    **

consensus_4821#0      GCACTTCGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCG 834
consensus_4821#1      ATGCTACACAACGCTTGAAG-GAAGATAACGAACATCCGAAGGTCCGCAGACGCATCTCG 505
                         ** *    ***  * ** *  * **  *  *   *** *   *  *  *** *****

consensus_4821#0      GCAGCGGCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGT 894
consensus_4821#1      CT--CGTCACGCGTCACTTGCTGACCAGTTGCTGCTACTCACACACACACACGCTGGATG 563
                          ** **       *    *****   * * *    ** *    *     * ***   

consensus_4821#0      TGGGCGGCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGAC 954
consensus_4821#1      GTGTTGGCGAGCGACTTAGT--ATAACCGG-GAACCGAGCACG----------------- 603
                        *  *** * * *    *    *   **  ***  ** * *                  

consensus_4821#0      AACAATCGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG 1007
consensus_4821#1      -----------------------------------------------------