These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 893 fasta sequence [TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCCGTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAACACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCGGCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGACTCGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACACGCAGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCTGGTGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCTGCAGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG] [+] EMBL BX604358 [TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCCGTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAACACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCGGCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGG ] [+] EMBL BX605242 [ TCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGACTCGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACACGCAGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCTGGTGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCTGCAGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG] consensusID : consensus_4824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAGCTGCACAACACGTGCAGGCTGTTATCGTACACACACACACATACACCATACCATACGCTTTACTTTTCCTCCGCCTTCCGCTCAGATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCG] [+] EMBL BX604106 [GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAGCTGCACAACACGTGCAGGCTGTTATCGTACACACACACACATACACCATACCATACGCTTTACTTTTCCTCCGCCTTCCGCTCAGATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4824#0 TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCC 60 consensus_4824#1 ------------------------------------------------------------ consensus_4824#0 GTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAAC 120 consensus_4824#1 ------------------------------------------------------------ consensus_4824#0 ACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCG 180 consensus_4824#1 ------------------------------------------------------------ consensus_4824#0 GCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCC 240 consensus_4824#1 -----------------------GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCC 37 ************************************* consensus_4824#0 TTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCT 300 consensus_4824#1 TTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCT 97 ************************************************************ consensus_4824#0 TTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTG 360 consensus_4824#1 TTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTG 157 ************************************************************ consensus_4824#0 AGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGT 420 consensus_4824#1 AGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGT 217 ************************************************************ consensus_4824#0 AAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACC 480 consensus_4824#1 AAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACC 277 ************************************************************ consensus_4824#0 GAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATAT-CAAGTACGAGATGGAC 539 consensus_4824#1 GAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAG 337 *************************************** ** * ** ** * ** consensus_4824#0 ATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCG-GTGCTC 598 consensus_4824#1 CTGCACA---ACACGTGCAGGCTGTT--------ATCGTA-CACACACACACATACACCA 385 ** * * * *** *** * * **** * ** ** * * * consensus_4824#0 GAGCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGA 658 consensus_4824#1 TACCATACGCTTTACTTTTCCTCCG---CCTTCCGCTCAGATATCA-AGTACGAGATGGA 441 * * ** * * *** * ***** ** * ** ** ***** *** consensus_4824#0 CTCGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACAC 718 consensus_4824#1 CATGAAGATGGAACCGTCCAGCCCGCCGG---AAAAGGATCGC----------AACATGT 488 * * * * **** ** * * ***** *** *** consensus_4824#0 GCAGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCT 778 consensus_4824#1 ACTCGCGGTGCTCGAGCG-CGGGCAGCATCCACACACCGACCTCCTCCG----------- 536 * **** ** **** ** * ** ** * * ** consensus_4824#0 GGTGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCT 838 consensus_4824#1 ------------------------------------------------------------ consensus_4824#0 GCAGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG 893 consensus_4824#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||