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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence
[GCANGAATCGCCCCGAGGTTTTNATCAGAAGATCNGAGACGAAGTGAGCTGTTCAANGTGGCTGGCGCGGAAGATTTCGCACAAATTTTTCGAAGGCCGATGTTACTGCGTGAGCGCAAGGGTGAACGAAGTACATCCGACGACATGATGTGCGCCACAAATGGAATCCATCTCGGAGCGAGTGCTGGATTTTCCCAAATTAGAAAACTGACCGCAANGGCTGCTGAACTGCTTGCGCATACAAGTCCCTGTTCGTATAGGCTGCCTGTATACTGCGCTTGATCCCTTCCGGACGCGTGTTAATGCTCCGGGGCAGGTTTGGGACGAGGCAGGATCGGTCGGTACGGTCCGCTATTGTCCTATATTGGTTGTACATTTTAACCGAAAACTGTTGTTAGTNATGGTACGATTACTTAGTGGGCATTAAAGCCATGTGCTTGGTAAACCAAAACCCTACTTACTTGGAAAGCCTTAACACTTTGGCCATTGAAACCCCAACAAACAGGTAAGCAACATGCTGCGCTGGCACAGNCCACCCCCAAAGGTTTTGGTGCCCCCGTGCGACAGGAAAAGGCCTGGGGAATGGCAAANACACAACACGGTTTGGCGCNNACTTTAATTTTTCGCCAAACATATATTGGTGTCTCAACTTACAGGGCCGGTGTTGGTTCCACACGGGGCAAGTTNTCTACAGCCAAAAAACTCCTATGGGTGNAACCCAAANCAGAAAAGCGGTTTTTCTTTTTCTCTCCAAANGGGGCAGCCANANTGTNANCATGGATGCCCATGGTACCNCCCCGATTTTATTTATTAGACGCCATTTGGTGAAAANGGACGCCCCCGGGTAAGATANTAACAGCNTTTAAANATGTGCTGTCAAATAGACGTGTGCGATAATAATATGATNCACACCCACCCNTGTAGTGCGACAGGTGTCTGCACAAACGATGGTGGCAAAGGCCGCCCGTTATATATATACCATCGACCACCGCACANGCAACCACGGGGTCACACCCCCCNCCGACAAACGCAANACACAAGACTTGTGGTNGNCCCCCCAAAACCTTANCTATACTTNNGGCCANACGACTATTGTGGTCAAACCACTTNTGGCAAACCCCTTTGNTNGAAACATTTTCCCCCCACAGATGTGGNGGGTTGTATGCTACCCCCNTTANNCACNCCCGNGCAGAGATATTAGTTGCCCAGCGGGCATACAAANTACCCCGGGGTAGAAAANCATATNGANGGGGCCNCACGCAGTCGATCATGGGTGATAGATCACCCCCGGGTGGCGATCTCAACACANTTTTCTTGGNGGCACACCACAACGGGCGCAAACATTNTAATTGGCGGGGCCANAGCNTTTGTGNCAANNAACAGCGGCAAAAACAACAAGTCAGGTGGGCGAAACACANTTCTTCTNTAAATTGTACCANTGATCGAAGATATGATCGANTGTACTGATTAGTTCACCAATCA]
[+] EMBL AL930729 [GCANGAATCGCCCCGAGGTTTTNATCAGAAGATCNGAGACGAAGTGAGCTGTTCAANGTGGCTGGCGCGGAAGATTTCGCACAAATTTTTCGAAGGCCGATGTTACTGCGTGAGCGCAAGGGTGAACGAAGTACATCCGACGACATGATGTGCGCCACAAATGGAATCCATCTCGGAGCGAGTGCTGGATTTTCCCAAATTAGAAAACTGACCGCAANGGCTGCTGAACTGCTTGCGCATACAAGTCCCTGTTCGTATAGGCTGCCTGTATACTGCGCTTGATCCCTTCCGGACGCGTGTTAATGCTCCGGGGCAGGTTTGGGACGAGGCAGGATCGGTCGGTACGGTCCGCTATTGTCCTATATTGGTTGTACATTTTAACCGAAAACTGTTGTTAGTNATGGTACGATTACTTAGTGGGCATTAAAGCCATGTGCTTGGTAAACCAAAACCCTACTTACTTGGAAAGCCTTAACACTTTGGCCATTGAAACCCCAACAAACAGGTAAGCAACATGCTGCGCTGGCACAGNCCACCCCCAAAGGTTTTGGTGCCCCCGTGCGACAGGAAAAGGCCTGGGGAATGGCAAANACACAACACGGTTTGGCGCNNACTTTAATTTTTCGCCAAACATATATTGGTGTCTCAACTTACAGGGCCGGTGTTGGTTCCACACGGGGCAAGTTNTCTACAGCCAAAAAACTCCTATGGGTGNAACCCAAANCAGAAAAGCGGTTTTTCTTTTTCTCTCCAAANGGGGCAGCCANANTGTNANCATGGATGCCCATGGTACCNCCCCGATTTTATTTATTAGACGCCATTTGGTGAAAANGGACGCCCCCGGGTAAGATANTAACAGCNTTTAAANATGTGCTGTCAAATAGACGTGTGCGATAATAATATGATNCACACCCACCCNTGTAGTGCGACAGGTGTCTGCACAAACGATGGTGGCAAAGGCCGCCCGTTATATATATACCATCGACCACCGCACANGCAACCACGGGGTCACACCCCCCNCCGACAAACGCAANACACAAGACTTGTGGTNGNCCCCCCAAAACCTTANCTATACTTNNGGCCANACGACTATTGTGGTCAAACCACTTNTGGCAAACCCCTTTGNTNGAAACATTTTCCCCCCACAGATGTGGNGGGTTGTATGCTACCCCCNTTANNCACNCCCGNGCAGAGATATTAGTTGCCCAGCGGGCATACAAANTACCCCGGGGTAGAAAANCATATNGANGGGGCCNCACGCAGTCGATCATGGGTGATAGATCACCCCCGGGTGGCGATCTCAACACANTTTTCTTGGNGGCACACCACAACGGGCGCAAACATTNTAATTGGCGGGGCCANAGCNTTTGTGNCAANNAACAGCGGCAAAAACAACAAGTCAGGTGGGCGAAACACANTTCTTCTNTAAATTGTACCANTGATCGAAGATATGATCGANTGTACTGATTAGTTCACCAATCA]
consensusID : consensus_4825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 700 fasta sequence
[CCTGATGCCGTACTATCGCGATCAGAAGATCGAGACGAAGGAGCTGTTCAAGGGGCTGGCGCGGAAGATTTCGCACAAATTTTTCGAAGCCGATGTTACTGCGGAGCGCAAGGTGAAGAAGTACATCGACGACATGATGGCCCACAAAGGAATCATCTCGAGCGAGGCGGATTTTCCCAAATAGAAACGACGCAAGGCGCGAACGCGCGCATACAAGTCCCGTTCGTATAGGCGCCGTTCGCGCTGATCCTCCGACGCGGTAAGCTCGGGCAGGTTGGACGAGCAGGATCGTCGTCGTCGTTGTCTATATGGTGTAATTTAACGAACGTGTGTTGTACATACTAGTGGATAAGCAGGCTGTAACAACCCTCTCTGAACTACCTTGCATGACCCCAAAAGTAGAAAGCGCGCGCGCCCAGTGGCCGGAGAGCGGATAAAAGTGCATATTCCAATTGTTATAGCGTGTCAGGATTTAGCAAACGGCCACACTCTCCAGCAGCGCGCCTTTACTGAGCCGAAACTAGCAGCAAACCCCGCAGCAGGACCTTTCCCCCCGCCCCACAATGCCATTTGATGATGATGATCATGTTCTCCGTTCGAACGATGGCGGTGACCGTATTGAAGATTGATGAGGAGGATTTTTTTTTTAAATTTGTGTTTTTGT-CACCACTATACTGCCGGGGGTGTGCTTGTGTGTGTG]
[+] EMBL BX615827 [CCTGATGCCGTACTATCGCGATCAGAAGATCGAGACGAAGGAGCTGTTCAAGGGGCTGGCGCGGAAGATTTCGCACAAATTTTTCGAAGCCGATGTTACTGCGGAGCGCAAGGTGAAGAAGTACATCGACGACATGATGGCCCACAAAGGAATCATCTCGAGCGAGGCGGATTTTCCCAAATAGAAACGACGCAAGGCGCGAACGCGCGCATACAAGTCCCGTTCGTATAGGCGCCGTTCGCGCTGATCCTCCGACGCGGTAAGCTCGGGCAGGTTGGACGAGCAGGATCGTCGTCGTCGTTGTCTATATGGTGTAATTTAACGAACGTGTGTTGTACATACTAGTGGATAAGCAGGCTGTAACAACCCTCTCTGAACTACCTTGCATGACCCCAAAAGTAGAAAGCGCGCGCGCCCAGTGGCCGGAGAGCGGATAAAAGTGCATATTCCAATTGTTATAGCGTGTCAGGATTTAGCAAACGGCCACACTCTCCAGCAGCGCGCCTTTACTGAGCCGAAACTAGCAGCAAACCCCGCAGCAGGACCTTTCCCCCCGCCCCACAATGCCATTTGATGATGATGATCATGTTCTCCGTTCGAACGATGGCGGTGACCGTATTGAAGATTGATGAGGAGGATTTTTTTTTTAAATTTGTGTTTTTGT CACCACTATACTGCCGGGGGTGTGCTTGTGTGTGTG]
[+] EMBL BX614491 [ GCTGATCCTCCGACGCGGTAAGCTCGGGCAGGTTGGACTAGCAGGATCGTCGTCGTCGTTGTCTATATGGTGTAATTTAACGAACGTGTGTTGTACATACTAGTGGATAAGCAGGCTGTAACAACCCTCTCTGAACTACCTTGCATGACCCCAAAAGTAGAAAGCGCGCGCGCCCAGTGGCCGGAGAGCGGAGAAAAGTGCATATTCCAATTGTTATAGCGTGTCAGGATTTAGCAAACGGCCACACTCTCCAGCAGCGCGCCTTTACTGAGCCGAAACTAGCAGCAAACCCCGCAGCAGGACTTTTCCCCCCGCCCCACAATGCCATTTGATGATGATGATCATGTTCTCCGTTCGAACGATGGCGGTGACCGTATTGAAGATTGATGAGAAGGATTTTTTTTTTAAATTTGTGTTTTTGTCCACCACTATACTGCCGGGGGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4825#0 GCANGAATCGCCCCGAGGTTTTNATCAGAAGATCNGAGACGAAGTGAGCTGTTCAANGTG 60
consensus_4825#1 -CCTGA--TGCCGTACTATCGCGATCAGAAGATCG-AGACGAAG-GAGCTGTTCAAGG-G 54
* ** *** * *********** ******** *********** * *
consensus_4825#0 GCTGGCGCGGAAGATTTCGCACAAATTTTTCGAAGGCCGATGTTACTGCGTGAGCGCAAG 120
consensus_4825#1 GCTGGCGCGGAAGATTTCGCACAAATTTTTCGAAG-CCGATGTTACTGCG-GAGCGCAAG 112
*********************************** ************** *********
consensus_4825#0 GGTGAACGAAGTACATCCGACGACATGATGTGCGCCACAAATGGAATCCATCTCGGAGCG 180
consensus_4825#1 G-TGAA-GAAGTACATC-GACGACATGATG-GC-CCACAAA-GGAATC-ATCTCG-AGCG 164
* **** ********** ************ ** ******* ****** ****** ****
consensus_4825#0 AGTGCTGGATTTTCCCAAATTAGAAAACTGACCGCAANGGCTGCTGAACTGCTTGCGCAT 240
consensus_4825#1 AGG--CGGATTTTCCCAAAT---AGAAACGAC-GCAAGG--CGCGAA----CGCGCGCAT 212
** ************** * ** *** **** * ** * * ******
consensus_4825#0 ACAAGTCCCTGTTCGTATAGGCTGCCTGTATACTGCGCTTGATCCCTTCCGGACGCGTGT 300
consensus_4825#1 ACAAGTCCC-GTTCGTATAGGCGCCGT-----TCGCGCT-GATCC--TCCG---ACGCGG 260
********* ************ * * ***** ***** **** ** *
consensus_4825#0 TAATGCTCCGGGGCAGGTTTGGGACGAGGCAGGATCGGTCGGTACGGTCCGCTATTGTCC 360
consensus_4825#1 TAA-GCTC--GGGCAGGTT--GGACGAG-CAGGATCG-TCG-------TCGTCGTTGTC- 305
*** **** ********* ******* ******** *** ** *****
consensus_4825#0 TATATTGGTTGTACATTTTAACCGAAAACTGTTGTTAGTNATGGTACGATTACTTAGTGG 420
consensus_4825#1 TATATG----GTGTAATTTAACGAACGTGTGTTGTACATACTAGT--GGATAAGCAGGCT 359
***** ** * ****** * ****** * * ** * ** **
consensus_4825#0 GCATTAAAGCCATGTGCTTGGTAAACCAAAACCCTACTTACTTGGAAAGCCTTAACACTT 480
consensus_4825#1 GTAACAACCCTCTCTGAACTACCTTGCATGACCCCAA--AAGTAGAAAGCGCGCGCGCCC 417
* * ** * * ** ** **** * * * ****** * *
consensus_4825#0 TGGCCATTGAAACCCCAACAAACAGGTAAGCAACATGCTGCGCTGGCACAGNCCACCCCC 540
consensus_4825#1 -AGTGGCCGGAGAGCGGATAAAAGTGCATATTCCA-ATTGTTATAGCGT-GTCAGGATTT 474
* * * * * *** * * ** ** * ** * *
consensus_4825#0 AAAGGTTTTGGTGCCCCCGTGCGACAGGAAAAGGCCTGGGGAATGGCAAANACA-CAACA 599
consensus_4825#1 AGCA-----AACGGCCACACTCTCCAGCAGCGCGCCTTTACTGAGCCGAAACTAGCAGCA 529
* * ** * * *** * **** * * ** * ** **
consensus_4825#0 CGGTTTGGCGCNNACTTTAATTTTTCGCCAAACATATATTGGTGTCTCAACTTACAGGGC 659
consensus_4825#1 AACCCCGCAGCAGG----ACCTTTCCCCCCGCCCCACAATGCCATTTGA--TGATGATGA 583
* ** * *** * ** * * * ** * * * * * *
consensus_4825#0 CGGTGTTGGTTCCACACGGGGCAAGTTNTCTACAGCCAAAAAACTCCTATGGGTGNAACC 719
consensus_4825#1 TCATGTT--CTCCGTTCGAACGATGGCGGTGACCGTATTGAAGATTG-ATGAGGAGGATT 640
**** *** ** * * ** * ** * *** * *
consensus_4825#0 CAAANCAGAAAAGCGGTTTTTCTTTTTCTCTCCAAANGGGGCAGCCANANTGTNANCATG 779
consensus_4825#1 TTTTTTTTAAATTTGTGTTTTTGTCACCACTATACTGCCGGGGGTGTGCTTGTGTGTGTG 700
*** * **** * * ** * ** * *** **
consensus_4825#0 GATGCCCATGGTACCNCCCCGATTTTATTTATTAGACGCCATTTGGTGAAAANGGACGCC 839
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 CCCGGGTAAGATANTAACAGCNTTTAAANATGTGCTGTCAAATAGACGTGTGCGATAATA 899
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 ATATGATNCACACCCACCCNTGTAGTGCGACAGGTGTCTGCACAAACGATGGTGGCAAAG 959
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 GCCGCCCGTTATATATATACCATCGACCACCGCACANGCAACCACGGGGTCACACCCCCC 1019
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 NCCGACAAACGCAANACACAAGACTTGTGGTNGNCCCCCCAAAACCTTANCTATACTTNN 1079
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 GGCCANACGACTATTGTGGTCAAACCACTTNTGGCAAACCCCTTTGNTNGAAACATTTTC 1139
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 CCCCCACAGATGTGGNGGGTTGTATGCTACCCCCNTTANNCACNCCCGNGCAGAGATATT 1199
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 AGTTGCCCAGCGGGCATACAAANTACCCCGGGGTAGAAAANCATATNGANGGGGCCNCAC 1259
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 GCAGTCGATCATGGGTGATAGATCACCCCCGGGTGGCGATCTCAACACANTTTTCTTGGN 1319
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 GGCACACCACAACGGGCGCAAACATTNTAATTGGCGGGGCCANAGCNTTTGTGNCAANNA 1379
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 ACAGCGGCAAAAACAACAAGTCAGGTGGGCGAAACACANTTCTTCTNTAAATTGTACCAN 1439
consensus_4825#1 ------------------------------------------------------------
consensus_4825#0 TGATCGAAGATATGATCGANTGTACTGATTAGTTCACCAATCA 1482
consensus_4825#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||