cluster # 4834

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Anopheles gambiae
cluster # 4834 cluster # 4834 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4834#0 length = 578 sequences # 1

consensus_4834#1 length = 464 sequences # 1
consensus_4834#2 length = 444 sequences # 1

consensusID : consensus_4834#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGCAAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGGAACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGGAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC]

[+] EMBL BX615481             [GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGCAAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGGAACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGGAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC]




>consensus_4834#0
GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACAT
AGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCG
CTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGC
AAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGG
AACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGC
AAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACC
GGAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACAC
TATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAG
ATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTG
GGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC

consensusID : consensus_4834#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [AAGAATCGGCACGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACATAATACGTTAGCGTTTACAGTACCATAGCTCAACAAAACAATACAAAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTTTGCAAAGTTTGCGAGTAGGAAAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGTANAGCAAAGACATAAGACATAAAGCACACACACACACAAGCACACAACACNANCNATGGCNCAGAGNCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA]

[+] EMBL BX468096             [AAGAATCGGCACGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACATAATACGTTAGCGTTTACAGTACCATAGCTCAACAAAACAATACAAAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTTTGCAAAGTTTGCGAGTAGGAAAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGTANAGCAAAGACATAAGACATAAAGCACACACACACACAAGCACACAACACNANCNATGGCNCAGAGNCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA]




>consensus_4834#1
AAGAATCGGCACGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATAT
GGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAA
TGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGA
TACATAATACGTTAGCGTTTACAGTACCATAGCTCAACAAAACAATACAAAAAGCAGCCC
GCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTT
TGCAAAGTTTGCGAGTAGGAAAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGT
ANAGCAAAGACATAAGACATAAAGCACACACACACACAAGCACACAACACNANCNATGGC
NCAGAGNCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA

consensusID : consensus_4834#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGTAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAT]

[+] EMBL BX614193             [TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGTAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAT]




>consensus_4834#2
TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGA
AAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGTAAGTACGAAAGCAG
ATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAG
ACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGA
CGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGA
AAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACT
ATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAAT
TACATCAATTGGGAAAGGATACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4834#0      GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACAT 60
consensus_4834#2      ------------------------------------------------------------
consensus_4834#1      ------------------------------------------------------------
                                                                                  

consensus_4834#0      AGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCG 120
consensus_4834#2      ------------------------------------------------------------
consensus_4834#1      ------------------------------------------------------------
                                                                                  

consensus_4834#0      CTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGC 180
consensus_4834#2      ------------------------------------------------------------
consensus_4834#1      ------------------------------------------------------------
                                                                                  

consensus_4834#0      AAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGG 240
consensus_4834#2      ------------------------------------------------------------
consensus_4834#1      -------------------------------------------------AAGAATCGGCA 11
                                                                                  

consensus_4834#0      AACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAAT-TTAG 299
consensus_4834#2      ----------------TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAAT-TTAG 43
consensus_4834#1      CGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTG 71
                                        *   ** * ******  *  * ***** *    ** * *  *

consensus_4834#0      CAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAAC 359
consensus_4834#2      CAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAAC 103
consensus_4834#1      GATGGGGACGAGCAATATAAAACACACACTATATCAA--AGCTCGAACAAATGACGCGAG 129
                       *    ** **  ** * **   * *  ** **  **  *  *  ** ***  * ** * 

consensus_4834#0      CGGA-AGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGA-ACGCAAAA 417
consensus_4834#2      CGTA-AGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGA-ACGCAAAA 161
consensus_4834#1      CACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACATAATA 189
                      *  * ***  *   *  *     **        * **     *  **  ** **  ** *

consensus_4834#0      CACTA-TGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTG 476
consensus_4834#2      CACTA-TGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTG 220
consensus_4834#1      CGTTAGCGTTTACAGTACCATAGCTCAACAAAACA-ATACAAAAAGCAGCCCGCTGCATT 248
                      *  **  *   * ** *     *   ***** **  * **  * *  **       * * 

consensus_4834#0      GCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAA--CAAGTCTGGCA--- 531
consensus_4834#2      GCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAA--CAAGTCTGGCA--- 275
consensus_4834#1      GATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTTTGCAAAGT 308
                      *  * * **  *   *   **   * * **    * *    * *  ***** **  *   

consensus_4834#0      TTGGAACTGGGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC------------- 578
consensus_4834#2      TTGGAACTGGGACAAAGTGTATGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGG 335
consensus_4834#1      TTGCGAGTAGGA-AAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGTANAGCAA 367
                      ***  * * *** **********         *   *  *     *              

consensus_4834#0      ------------------------------------------------------------
consensus_4834#2      GGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAG 395
consensus_4834#1      AGACATAAGACATAAAGCACACAC-ACACACAAGCACACAACACNANCNATGGCNCAGAG 426
                                                                                  

consensus_4834#0      -------------------------------------------------
consensus_4834#2      TGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAT 444
consensus_4834#1      NCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA----------- 464