These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence [CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCGAATCCGTCGGGCCCAAGCTAGAACCGTCGGTGGTCCCATCGGCATTGAGCTTCCTCGAGCTGGCCATGCAGCATTATGCTGGTGCTTGTGGGCCGTTGAAAAGCCGCATCGAGACGTTCCTTTACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTTTGCTGCTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT] [+] EMBL BM623194 [CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAA ] [+] EMBL BM599155 [ ccgGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCGAATCCGTCGGGCCCAAGCTAGAACCGTCGGTGGTCCCATCGGCATTGAGCTTCCTCGAGCTGGCCATGCAGCATTATGCTGGTGCTTGTGGGCCGTTGAAAAGCCGCATCGAGACGTTCCTTTACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTTTGCTGCTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT] consensusID : consensus_4840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CCGCGGACGCGTGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGAATCCGTCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAGTTGGCCATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA] [+] EMBL BM589709 [CCGCGGACGCGTGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGAATCCGTCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAGTTGGCCATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4840#0 CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCT 60 consensus_4840#1 CCGCGGACGCG-----TGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCT 55 ***** *** * * **************************************** consensus_4840#0 CGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGAC 120 consensus_4840#1 CGTAATACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGAC 115 *************** ******************************************** consensus_4840#0 AGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGG 180 consensus_4840#1 AGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGG 175 ************************************************************ consensus_4840#0 TCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGT 240 consensus_4840#1 TCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGT 235 ************************************************************ consensus_4840#0 GCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTG 300 consensus_4840#1 GCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTG 295 ************************************************************ consensus_4840#0 GATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAG 360 consensus_4840#1 GATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAG 355 ************************************************************ consensus_4840#0 CGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGC 420 consensus_4840#1 CGTGGGCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGC 415 *********************** ************************************ consensus_4840#0 TCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCG-A 479 consensus_4840#1 TCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGA 475 *********************************** ********************** * consensus_4840#0 ATCCGTCGGGCCCAAGCTAGAA-CCGTCGGTGGTCCCATCGGCATTGAGCTT-CCTCGAG 537 consensus_4840#1 ATCCGTCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAG 535 ********************** ** **** ********************* ******* consensus_4840#0 CTGGCCATGCAGCATTATGCTGG-TGCTTG-TGGGCCGTTGAAAAGCCGCATCGAGACGT 595 consensus_4840#1 TTGGCCATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA------------------ 577 ********************** ****** *********** consensus_4840#0 TCCTTTACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTT 655 consensus_4840#1 ------------------------------------------------------------ consensus_4840#0 TGCTGCTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT 715 consensus_4840#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||