These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1003 fasta sequence [CATCCAAGCGAAGAAGAAGCAGACGGTGCGAGCAGAAAATCGCGAGAAGTTCGTTCCAAGTGCAAGTCAGTGACCAGTAAATCGGGAAAAACACATTATAATCAAAGATGGCAGCCGCAAAAGCACCAGCAGTCGGTATTGATCTGGGTACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAGGTCGAGATCATCGCCAACGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACTGATACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACCCGACCAACACCATTTTCGACGCGAAGCTGTAATCGGCCGCAAGTTCGACGATCCCGCGATCCAGGCCGACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGAGCACCGCCAGAAGGAGCTCGAGTCGGTGTGCAACCCGATCATCAGCAAGCTGTACCAGGGCGCCGGTGGTGCCCCGGGAGGCATGCCCGGATTCCCGGGCGGTGCTCCGGGTGCGGGCGGAGAGCCGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGACCATCGAGGAGGTCGACTAAATCACTCTACATTCCGACTGATGATGGCGCGTCGTCGTGTGTGTGTGTACCACAAGACTATGCTGTCTGCAGAGAGGGGAAAGGACGGGAATGCAATCGCTTCTCCGTGCTTCAACAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAAACACATCATCTTGCCCCCACTGTATTATCACGTCGTACGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAACCCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTTTTCTTTTGATCTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTGGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTACTTCAGCGATCGTTG] [+] EMBL CNS08IVJ [CATCCAAGCGAAGAAGAAGCAGACGGTGCGAGCAGAAAATCGCGAGAAGTTCGTTCCAAGTGCAAGTCAGTGACCAGTAAATCGGGAAAAACACATTATAATCAAAGATGGCAGCCGCAAAAGCACCAGCAGTCGGTATTGATCTGGGTACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAGGTCGAGATCATCGCCAACGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACTGATACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACCCGACCAACACCATTTTCGACGCGAAGCTGTAATCGGCCGCAAGTTCGACGATCCCGCGATCCAGGCCGACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGAGCACCGCCAGAAGGAGCTCGAGTCGGTGTGCAACCCGATCATCAGCAAGCTGTACCAGGGCGCCGGTGGTGCCCCGGGAGGCATGCCCGGATTCCCGGGCGGTGCTCCGGGTGCGGGCGGAGAGCCGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGACCATCGAGGAGGTCGACTAAATCACTCTACATTCCGACTGATGATGGCGCGTCGTCGTGTGTGTGTGTACCACAAGACTATGCTGTCTGCAGAGAGGGGAAAGGACGGGAATGCAATCGCTTCTCCGTGCTTCAACAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAAACACATCATCTTGCCCCCACTGTATTATCACGTCGTACGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAACCCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTTTTCTTTTGATCTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTGGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTACTTCAGCGATCGTTG] consensusID : consensus_4847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence [CGCTCGGTATCGAGACGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGGCCATCGAGGAGGTCGAGTAAATCAATCTACATTCCGACTGATGTTGGCGCGTCGTCGTGTGTGTGTACCACAAGACTATGCTGTCGGCAGAGAGGGGAAAGGACGGGAAGGCAATCGCTTCTCCGTGCTTCAAGAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAACACATCATCTTGCCCCCACTGTATTTTCACGTCGTATGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAAACCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTCTTCTTTTGATGTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTCGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTGCTTCAGCGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGCGCTCGCGTGATATATGCTGACAAGTATTTTAGCTTTAATGTTGAATGTTAGTTTATTTTGCGCTTCTCGGGTCTTCCTGCGATGGGAGCGGAGGAGGAGAGGTCGCGCAACCCAGTATCCACGATTGCACACGCGAACACTTGCTCTTCTCTTGCCCAGCCAATAATGATATGCGCGCGTAAGTGCTGATTGAAATTTTAAACAAACGAAACAAGAAATAGACCAAACAGATAAATAAAAGAAAGAGCTCTGTTAACACTCCAATGAACAACATCTAGATTGGAGGGAAATTAGAA] [-] EMBL CNS08UVZ [CGCTCGGTATCGAGACGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGGCCATCGAGGAGGTCGAGTAAATCAATCTACATTCCGACTGATGTTGGCGCGTCGTCGTGTGTGTGTACCACAAGACTATGCTGTCGGCAGAGAGGGGAAAGGACGGGAAGGCAATCGCTTCTCCGTGCTTCAAGAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAACACATCATCTTGCCCCCACTGTATTTTCACGTCGTATGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAAACCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTCTTCTTTTGATGTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTCGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTGCTTCAGCGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGCGCTCGCGTGATATATGCTGACAAGTATTTTAGCTTTAATGTTGAATGTTAGTTTATTTTGCGCTTCTCGGGTCTTCCTGCGATGGGAGCGGAGGAGGAGAGGTCGCGCAACCCAGTATCCACGATTGCACACGCGAACACTTGCTCTTCTCTTGCCCAGCCAATAATGATATGCGCGCGTAAGTGCTGATTGAAATTTTAAACAAACGAAACAAGAAATAGACCAAACAGATAAATAAAAGAAAGAGCTCTGTTAACACTCCAATGAACAACATCTAGATTGGAGGGAAATTAGAA] [-] EMBL CNS09N3P [ aAGAGGGGAAAGGACGGGAATGAAATCGCTTCTCCGTGCTTCAAAAAAACCATTTACCACCAGTGTCATCTTCCCTTTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAAAACATCTTCTTGCCCCCACTGTATTTTCACGTCGTATGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAAACCAAACCCCACAGCACCTGCCCTCTTTTCTTCTGCCAGTCTTCTTTTGATCTTTTTCATCTTTTCACCAAAACACCACCACCTCAGCAGCCAGTCGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTGCTTCAGCGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGGGCTCGCGTGATATATGCTGACAAGTATTTTA CTTTAATGTTGAATGTTA ] consensusID : consensus_4847#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCAAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCCAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAAAATTCCCACCCCCCCACACACACACCCACTATGTCCTAGAGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAGCATGTGAATCGCTTGGAAGGAGGTTCCCTCCCTACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTTTTTCTCCAAAACAATTTTTACAAACGCTAGCCCGTAAGATAGATAGAGCTGTCCAACACGTACTAACCGAGCAAAATCCCGCCTCAACATGGTGTAA] [+] EMBL BM600975 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCAAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCCAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAAAATTCCCACCCCCCCACACACACACCCACTATGTCCTAGAGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAGCATGTGAATCGCTTGGAAGGAGGTTCCCTCCCTACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTTTTTCTCCAAAACAATTTTTACAAACGCTAGCCCGTAAGATAGATAGAGCTGTCCAACACGTACTAACCGAGCAAAATCCCGCCTCAACATGGTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4847#0 CATCCAAGCGAAGAAGAAGCAGACGGTGCGAGCAGAAAATCGCGAGAAGTTCGTTCCAAG 60 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 TGCAAGTCAGTGACCAGTAAATCGGGAAAAACACATTATAATCAAAGATGGCAGCCGCAA 120 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 AAGCACCAGCAGTCGGTATTGATCTGGGTACGACCTACAGCTGTGTCGGAGTGTTCCAGC 180 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 ACGGCAAGGTCGAGATCATCGCCAACGACCAGGGCAACCGAACCACGCCATCGTATGTGG 240 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 CCTTCACTGATACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACC 300 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 CGACCAACACCATTTTCGACGCGAAGCTGTAATCGGCCGCAAGTTCGACGATCCCGCGAT 360 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 CCAGGCCGACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGAGCACCGCCAGAAG 420 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 GAGCTCGAGTCGGTGTGCAACCCGATCATCAGCAAGCTGTACCAGGGCGCCGGTGGTGCC 480 consensus_4847#1 ------------------------------------------------------------ consensus_4847#2 -----------------------------------------CCGCCCACGCGTCCGCCCA 19 consensus_4847#0 CCGGGAGGCATGCCCGGATTCCCGGGCGGTGCTCCGGGTGCG-GGCGGAGAGCCGGCGGT 539 consensus_4847#1 --------------------------------------CGCTCGGTATCGAGACGGCGGT 22 consensus_4847#2 CGCGTCCGCCCACGCGTCCGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGT 79 * ** * * * * ** consensus_4847#0 GCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGACCA-----TCGAGGAGGTCGACTAAA 594 consensus_4847#1 GCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGGCCA-----TCGAGGAGGTCGAGTAAA 77 consensus_4847#2 TCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCA 139 *** ** ** * * * * * * * * * **** * **** * * consensus_4847#0 TCACTCTACATTCCGACTGATGATGGCGCGTCGTCGTGTGTGTGTGTACCACAAGACTAT 654 consensus_4847#1 TCAATCTACATTCCGACTGATGTTGGCGCGTCGTCGTGTGTGTGT--ACCACAAGACTAT 135 consensus_4847#2 CCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCAAAAC 199 ** * * *** ** * ** * *** * * ** * * consensus_4847#0 GCTGTCTGCAG-AGAGGGGAAAGGACGGGAATGCAATCGCTTCTCCGTGCTTCAACAAAA 713 consensus_4847#1 GCTGTCGGCAG-AGAGGGGAAAGGACGGGAAGGCAATCGCTTCTCCGTGCTTCAAGAAAA 194 consensus_4847#2 AGCAACAGCAGCAGGCCGGTGCCGTCTCCAACATGATCG-TCGTTTGTGTGACGTGTGTC 258 * **** ** ** * * ** **** * * *** * consensus_4847#0 CCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTC--AGCTAGCGGCGCTACCCCCCTG 771 consensus_4847#1 CCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTC--AGCTAGCGGCGCTACCCCCCTG 252 consensus_4847#2 GCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTG 318 * * ** * * * * * **** ** * *** * ** consensus_4847#0 GACAAACACATCATCTTGCCCCCAC-TGTATTATCAC---GTCGTACGCTGCT-TGAAAG 826 consensus_4847#1 GACAA-CACATCATCTTGCCCCCAC-TGTATTTTCAC---GTCGTATGCTGCT-TGAAAG 306 consensus_4847#2 GTCTTGAAAATTCCCACCCCCCCACACACACACCCACTATGTCCTAGAGCGCAGTGGGGG 378 * * * ** * ******* * *** *** ** ** ** * consensus_4847#0 CTAGCTTTTTCGCA-GTGAAAACCCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCA 885 consensus_4847#1 CTAGCTTTTTCGCA-GTGAAAAACCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCA 365 consensus_4847#2 ACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAGCATGTGAATCGCTTGGAAGGA 438 ** * * * * **** * * * * * * * * consensus_4847#0 GTTTTCTTTTGATCTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTGGA 945 consensus_4847#1 GTCTTCTTTTGATGTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTCGA 425 consensus_4847#2 GGTTCCCTCCCTACCCAAGCACACCACAATTGTGATAGC-TGTCCCTAGCAGAAAGAGTG 497 * * * * ** * * * * ** ***** ** consensus_4847#0 TTAGTGGCCATTTATCAT--TGTAGTTCGGTAGGG----AAAGGCATTACTTC-----AG 994 consensus_4847#1 TTAGTGGCCATTTATCAT--TGTAGTTCGGTAGGG----AAAGGCATTGCTTC-----AG 474 consensus_4847#2 AGAAAGTGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTTTTTCTCCAAAA 557 * * * * ** * *** * * * * **** *** * consensus_4847#0 CGATCGTTG--------------------------------------------------- 1003 consensus_4847#1 CGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGCGCTCGCGTGATATATGCTGA 534 consensus_4847#2 CAATTTTTACAAACGCTAGCCCGTAAGATAGATAGAGCTGTCCAACACGTACTAACCGAG 617 * ** ** consensus_4847#0 ------------------------------------------------------------ consensus_4847#1 CAAGTATTTTAGCTTTAATGTTGAATGTTAGTTTATTTTGCGCTTCTCGGGTCTTCCTGC 594 consensus_4847#2 CAAAATCCCGCCTCAACATGGTGTAA---------------------------------- 643 consensus_4847#0 ------------------------------------------------------------ consensus_4847#1 GATGGGAGCGGAGGAGGAGAGGTCGCGCAACCCAGTATCCACGATTGCACACGCGAACAC 654 consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 ------------------------------------------------------------ consensus_4847#1 TTGCTCTTCTCTTGCCCAGCCAATAATGATATGCGCGCGTAAGTGCTGATTGAAATTTTA 714 consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 ------------------------------------------------------------ consensus_4847#1 AACAAACGAAACAAGAAATAGACCAAACAGATAAATAAAAGAAAGAGCTCTGTTAACACT 774 consensus_4847#2 ------------------------------------------------------------ consensus_4847#0 ------------------------------------ consensus_4847#1 CCAATGAACAACATCTAGATTGGAGGGAAATTAGAA 810 consensus_4847#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||