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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1070 fasta sequence
[ATTTGTGCCTCCGAACGGTTAAGGCCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCGATTGCTTCGTTCGCATCCCGAA-GAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTTACATCAACAACAACAACAACCATTATAACATCCAAATCAAAACACACTTACCGGTAGCGATCGG]
[+] EMBL CNS08HR3 [ATTTGTGCCTCCGAACGGTTAAGGCCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCGATTGCTTCGTTCGCATCCCGAA GAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGC ]
[-] EMBL CNS08HR4 [ AGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGAACAAGGGTATCGTCAATTGCTTCGTTCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCAACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATTCCGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCAACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGAAACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCAACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAAGTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTTACATCAACAACAACAACAACCATTATAACATCCAAATCAAAACACACTTACCGGTAGCGATCGG]
consensusID : consensus_4848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 915 fasta sequence
[AATCGGCACGAGGTGAGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGACTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGGTCTACCCGGNCGCACCGATGATGNCCCCGACGCCGGCCATGCCGTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGGCCGCCCNACCGGCAGACAACCGTGCGCACCGTTGCCTCGAACACGCGACAGTGCCTGGGACGGATNTGGCATGTAGGACGACCATGCCCCGAAGGAATTCTGCAGCAGGCGCGCCCAGGAAGTGCAGGGCCGGCAGCGAGCAGGGCTTCTCACCNCCCNTGCAAAAACACCNCGCAATTTGCCTTAACCGAAACCTNAAACCCGGTGCTTCCCCCATACCCTTGGGCCAANANTTAACCAAAACGGCNCCCTTGCAAATTACGCCGCCTTCCANAGCATTAGCACCCACCCCGATTCCCTANGGAACCNCNCNCACACANACANACGCCGCTCCCTCTCTCTCCCACCCAAACACGCATACNCCGACAACTNCNCCTCTACCCCACCCCCACCCATNNCCCNCTACCGTTNTGCANCACGCCCCCCCNACCATCTGTCTTGTACTANCNACTGNCTTCNCC]
[+] EMBL BX469224 [AATCGGCACGAGGTGAGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGACTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGGTCTACCCGGNCGCACCGATGATGNCCCCGACGCCGGCCATGCCGTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGGCCGCCCNACCGGCAGACAACCGTGCGCACCGTTGCCTCGAACACGCGACAGTGCCTGGGACGGATNTGGCATGTAGGACGACCATGCCCCGAAGGAATTCTGCAGCAGGCGCGCCCAGGAAGTGCAGGGCCGGCAGCGAGCAGGGCTTCTCACCNCCCNTGCAAAAACACCNCGCAATTTGCCTTAACCGAAACCTNAAACCCGGTGCTTCCCCCATACCCTTGGGCCAANANTTAACCAAAACGGCNCCCTTGCAAATTACGCCGCCTTCCANAGCATTAGCACCCACCCCGATTCCCTANGGAACCNCNCNCACACANACANACGCCGCTCCCTCTCTCTCCCACCCAAACACGCATACNCCGACAACTNCNCCTCTACCCCACCCCCACCCATNNCCCNCTACCGTTNTGCANCACGCCCCCCCNACCATCTGTCTTGTACTANCNACTGNCTTCNCC]
consensusID : consensus_4848#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[CCGCGGACGCGTGGGGGTCAAAGCAAGACCTACCAACGGGTGTGACTGTGTGAGTTTTTTGTTTTGTTTTTTTTTTGTGCATCGTATAGTGTTAGTGACCATCAACACAACAATCGCAAACCATGGCTGCCGCCTGCAAGATCGATCTGACGTTCGAGAATGGCCACAAAATGCCGGCCCTTGGTTTCGGAACCTGGCGGGCTCCGGACGAGGAGGTGGAGAAAGCACTGAACCAGGCGCTCGAGGCCGGCTATCGGCACATCGACTGTGCGCCGGTCTATCTGAACGAGCCAACGATCGGGCGCGTACTGCGCCAGTGGATCGACAGTGGCCGGGTGACGCGCGAGGAGCTCTTCATCGTCACCAAGTTGCCGCCGCATGGTACGCGGGCCGCAACGGTTGAGAAATTTCTTAAACGATCGTTGACCGATCTTCAGCTCGATTACGTCGATCTGTACCTGGTGCACGTCCCGTTTACCGTGCCCGAAGTGGACGGTCCCTTCCTGACCGACGACAATGGGGAAATCGTACTCGAAACCACGACGGACCATGTCAGCCTCTGGAAGGGCATGGAAGCGATCGCCGATGCCGGTCTGGCACGCAGCATAGGGCTATCGAATTTCAACCAGCGGCAAATACAGAGAGTGCTCGATAATTGCCGAATTAAGCCGGCCAACTTGCAGATTGAAAATCAC]
[+] EMBL BM604905 [CCGCGGACGCGTGGGGGTCAAAGCAAGACCTACCAACGGGTGTGACTGTGTGAGTTTTTTGTTTTGTTTTTTTTTTGTGCATCGTATAGTGTTAGTGACCATCAACACAACAATCGCAAACCATGGCTGCCGCCTGCAAGATCGATCTGACGTTCGAGAATGGCCACAAAATGCCGGCCCTTGGTTTCGGAACCTGGCGGGCTCCGGACGAGGAGGTGGAGAAAGCACTGAACCAGGCGCTCGAGGCCGGCTATCGGCACATCGACTGTGCGCCGGTCTATCTGAACGAGCCAACGATCGGGCGCGTACTGCGCCAGTGGATCGACAGTGGCCGGGTGACGCGCGAGGAGCTCTTCATCGTCACCAAGTTGCCGCCGCATGGTACGCGGGCCGCAACGGTTGAGAAATTTCTTAAACGATCGTTGACCGATCTTCAGCTCGATTACGTCGATCTGTACCTGGTGCACGTCCCGTTTACCGTGCCCGAAGTGGACGGTCCCTTCCTGACCGACGACAATGGGGAAATCGTACTCGAAACCACGACGGACCATGTCAGCCTCTGGAAGGGCATGGAAGCGATCGCCGATGCCGGTCTGGCACGCAGCATAGGGCTATCGAATTTCAACCAGCGGCAAATACAGAGAGTGCTCGATAATTGCCGAATTAAGCCGGCCAACTTGCAGATTGAAAATCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4848#0 ATTTGTGCCTCCGAACGGTTAAGGCCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAG 60
consensus_4848#1 ------------------------------------------------------------
consensus_4848#2 ------------------------------------------------------------
consensus_4848#0 TTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATG-GC 119
consensus_4848#1 -------------------------------AATCGGCACGAGG--TGAGCGATACACGA 27
consensus_4848#2 ------------------------------------------------------------
consensus_4848#0 TTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTC-TCGAAAACGGCCGTAGC 178
consensus_4848#1 TCCACCAAAACCAGCGTA--TATCGGCACACATCGCGCAGCTACCGGGAGCAA--GTCGC 83
consensus_4848#2 ------------------------------------------------------------
consensus_4848#0 ACCGAT-CGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCG 237
consensus_4848#1 TCCGATACAACCGCACCGATCGACTTTTCCGCGTC---ACCTCCATCAAGCA-ACCGCTC 139
consensus_4848#2 ------------------------------------------------------CCGCGG 6
***
consensus_4848#0 TCGACAAGCAGTACAAGGGTATCGTCGATTGCTTCGTTCGCATCCCGAAGAGCAGGGAAT 297
consensus_4848#1 ----CAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGG---CT 192
consensus_4848#2 ACG-CGTGGGGGTCAAAGCAAG-ACCTACCAACGGGTGTGACTGTGTGAGTTTTTTGTTT 64
* * * *** * * * * *
consensus_4848#0 CGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCC-AGGCCC 356
consensus_4848#1 CGCTCGTGTCCGGCTCGATG-TTTGGCCCGTTCGGACCGTT-CGGACCGGCC----GCTC 246
consensus_4848#2 TGTTTTTTTTTTGTGCATCG-TATAGTGTTAGTGACCATCAACACAACAATCGCAAACCA 123
* * * * * * * * * * * * *
consensus_4848#0 TGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACA 416
consensus_4848#1 AGACTGCCGGGCGCAGTCG-GCGGCTATCCGGGCGCGGTCGGAGGGTATC--CGGGCGCG 303
consensus_4848#2 TGGCTGCCGCCTGCAA------GATCGATCTGACGTTCGAGAATGGC-----CACAAAAT 172
* ** ** * * * * ** *
consensus_4848#0 CCCAGTT-CTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGCCGGTGC-CAC 474
consensus_4848#1 GTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACA-GCTGCCCGTGTACCC 362
consensus_4848#2 GCCGGCCCTTGGTTTCGGAACCTGGCGGGCTCCGGACGAGGAGGTGGAGAAAGCAC---- 228
* * * * ** ** *** ** * * *
consensus_4848#0 GTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCG 534
consensus_4848#1 GCCGGTCTACCCGGNCGCACCGATGATGNCCCCGACG--CCGGCCATGCCGTACGCTTAC 420
consensus_4848#2 -TGAACCAGGCGCTCGAGGCCGGCTATCGGCACATCGA-CTG--TGCGCCGGTCTA-TCT 283
* * * * * * * * * ** * *
consensus_4848#0 GACGGTATCAT-CGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTA 593
consensus_4848#1 GGTCGCGCCATGCCGGCGATGATGCCAGTTGCGGCCGCCCNACCGGCAGACAACCGTG-- 478
consensus_4848#2 GAACGAGCCAA-CGATCGG-----------GCGCGTACTGCGCCAGTGGATCGACAGTGG 331
* * ** * * * * * *
consensus_4848#0 TCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATG-CTGCCGGACCCGAAGA 652
consensus_4848#1 -CGCACCGT-TGCCTCGAACACG-CGACAGTGCCTGGGACGGATNTGGCATGTAGGACGA 535
consensus_4848#2 CCGGGTGACGCGCGAGGAGCTCTTCATCGTCACCAAG-------TTGCCGC-CGCATGGT 383
** * * * * ** * ** * *
consensus_4848#0 ACAC-CTCCATCTTCGTCTCGTGGGCCAT-CGCACAGGTGGTGACGA--CGGCTTCCGGT 708
consensus_4848#1 CCATGCCCCGAAGGAATTCTGCAGCAGGCGCGCCCAGGAAGTGCAGGGCCGGCAGCGAGC 595
consensus_4848#2 ACGCGGGCCGCAACGGT----TGAGAAAT-TTCTTAAACGATCGTTGACCGATCTTCAGC 438
* ** * * * * ** *
consensus_4848#0 ATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCC 768
consensus_4848#1 AGGGCTTCTCACCNCCCN--TGCAAAAACACCNCGCAATTTGCCTTAACCGAAACCTN-- 651
consensus_4848#2 TCGATTACGTCGATCTGT---------ACCTGGTGCACGTCCCGTTTACCGTGCCC---- 485
* * * *** * *
consensus_4848#0 AAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAA 828
consensus_4848#1 AAACCCGGTGCTTCCCCCATACCCTTGGGCCAANANTTAACCAAAA-CGGCNCCCTTGCA 710
consensus_4848#2 GAAGTGGACGGTCCCTTCCTGACCGACGACAATGGGGAAATCGTACTCGAAACCACGACG 545
* * * * * * * * **
consensus_4848#0 GGTTCCGGCGCGTTCTTCAAGG---GCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGC 885
consensus_4848#1 AATTACGCCGCCTTCCANAGCATTAGCACCCACCCCGATTCCCTAN--GGAACCNCNCNC 768
consensus_4848#2 GACCATGTCAGCCTCTGGAAGG---GCATGGAAGCGATCGCC------GATGCCGGTCTG 596
* * ** * ** * * * *
consensus_4848#0 GCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAGACGGGGAACAG 945
consensus_4848#1 ACACANACANACGCCGCTCCCTCTCTCTCCCA--CCCAAACACGCATACNCCGACAACTN 826
consensus_4848#2 GCACGCA-GCATAGGGCTATCGA--ATTTCAA---CCAGC--GGCAAATACAGAGAGT-- 646
* * * * * ** * * * * *
consensus_4848#0 CACGC--ACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCA 1003
consensus_4848#1 CNCCTCTACCCCACCCCCACCCATNNCCCNCTACCGTTNTGCANCACGCCCCCCCNACCA 886
consensus_4848#2 -------GCTCGATAATTGCCGAATTAAGCCGGCCAACTTGCAGATTGAAAATCAC---- 695
* * * ** * *
consensus_4848#0 GTTACATCAACAACAACAACAACCATTATAACATCCAAATCAAAACACACTTACCGGTAG 1063
consensus_4848#1 TCTGTCTTG-TACTANCNACTGNCTTCNCC------------------------------ 915
consensus_4848#2 ------------------------------------------------------------
consensus_4848#0 CGATCGG 1070
consensus_4848#1 -------
consensus_4848#2 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||