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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1100 fasta sequence
[TCGTGCACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATAATGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCCATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACCAAGACGACGACCCACGCCGACCGCATGCGCCA-CAGCAAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAA]
[+] EMBL CNS08G6U [TCGTGCACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATAATGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCCATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACCAAGACGACGACCCACGCCGACCGCATGCGCCA CAGCAAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTA ]
[-] EMBL CNS08G6V [ AGGGGGTTTTGGCCGAAATCCGCGAAAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCCATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGGTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACAACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAGACGACGACCCACGCCGACCGCATGCGCCAGCAGC AGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTT TTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAA]
consensusID : consensus_4850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1047 fasta sequence
[CCGCGCTGTTCTTGCGCGAGCACAACCGCGTCGCCACGGCACTGGCCGCCCTGAACCGACACTGGGACGACGAGCGGCTGTACCAGGAGACGCGGCGTATCGTCGGCGCAGTGATGCAGAAGATTTTCTACAACGAGTACCTGCCGTCGATCGTGGGCCATAGCAAGGCACGCCAGTACGGGCTGCTCGACAGCCACGGGGAGCAGACGGACTTTTACAGTCCCGACGTGAAGCCTGCCGTTTTTAACGAACTGTCCGGGGCAGCTTTCCGTTTCGGCCATTCTACCGTGGATGGAGCGTTTTTGATCCAGCATCGCCATCGCCGCACGGAGCTGGTACCGATTCAGGAAGTCTTCCTGAACCCGTCCCGTCTGCTGCAGCGCTCGTTTTTCGACGACTTTCTCTTCTCGC-TGATGGATCAGCCGCAGCAGCAGCTGGACGATTCCATCACGTTCGGGGTTGACGCGGTTGCTGTTTGCGGGCCGCAACCCGTTCGGTTCGGATCTGGCGTCGCTCAACATACAGCGCGGCCGGGATCATGCGCTGCGCCCGTACAACGACTACCGGAGCTGGGCCGGCCTGGAGCGACTCACTAGCTTCCGAGCAGTTCCGGTCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCGGACGATGTGGACCTGTGGGTGGGCGGACTGCTGGAGCCCCCGACGCAGGATGGGGCACTGTTTGGCGAAACGTTCGCCGCCATCATTAGCGAACTGAGCAAGGTGTCGCTCGCCTCGGTCATCTGCGCCAACCTCGACCAGGCGGACGGGTTTTCCGCGCCCCGGGATGCGTTTAGACAGCCGAGCGAGCATAACCCGCCCGTCCCGTGCCAGACGCTAGTCGGGATGGATCTGTCCGCCTGGAGGGGTCACTAGCGGGGAGGGGTGAATTGTTTTATGTACTGCGTTTGTAGTATGGCAGGGTGTATTTGTGTAGTTTCGTGTTTTAAAGTAAGTGTTTCTGGAAACACGTATTTGTAGTTGGTAGTGTTGTGTTCGAATAAAAGATGTGCTG]
[+] EMBL BM606283 [CCGCGCTGTTCTTGCGCGAGCACAACCGCGTCGCCACGGCACTGGCCGCCCTGAACCGACACTGGGACGACGAGCGGCTGTACCAGGAGACGCGGCGTATCGTCGGCGCAGTGATGCAGAAGATTTTCTACAACGAGTACCTGCCGTCGATCGTGGGCCATAGCAAGGCACGCCAGTACGGGCTGCTCGACAGCCACGGGGAGCAGACGGACTTTTACAGTCCCGACGTGAAGCCTGCCGTTTTTAACGAACTGTCCGGGGCAGCTTTCCGTTTCGGCCATTCTACCGTGGATGGAGCGTTTTTGATCCAGCATCGCCATCGCCGCACGGAGCTGGTACCGATTCAGGAAGTCTTCCTGAACCCGTCCCGTCTGCTGCAGCGCTCGTTTTTCGACGACTTTCTCTTCTCGC TGATGGATCAGCCGCAGCAGCAGCTGGACGATTCCATCACGTTCGGGGTTGACGCGGTTGCTGTTTGCGGGCCGCAACCCGTTCGGTTCGGATCTGGCGTCGCTCAACATACAGCGCGGCCGGGATCATGCGCTGCGCCCGTACAACGACTACCGGAGCTGGGCCGGCCTGGAGCGACTCACTAGCTTCCGAGCAGTTCCGGTCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCG ]
[+] EMBL BX467411 [ ggcaagaaTCGCGCACGA GGATCAGCCGCAGCAGCAGCTGGACGATTCCATCACGTTC GGGTTGACGCGGTTGCTGTTTGCGGGCCGCAACCCGTTCGGTTCGGATCTGGCGTCGCTCAACATACAGCGCGGCCGGGATCATGCGCTGCGCCCGTACAACGACTACCGGAGCTGGGCCGGCCTGGAGCGACTCACTAGCTT CGAGCAGTT CGGTCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCGGACGATGTGGACCTGTGGGTGGGCGGACTGCTGGAGCCCCCGACGCAGGATGGGGCACTGTTTGGCGAAACGTTCGCCGCCATCATTAGCGAACTGAGCAAGGTGTCGCTCGCCTCGGTCATCTGCGCCAACCTCGACCAGGCGGACGGGTTTTCCGCGCCCCGGGATGCGTTTAGACAGCCGAGCGAGCATAACCCGCCCGTCCCGTGCCAGACGCTAGTCGGGATGGATCTGTCCGCCTGGAGGGGTCACTAGCGGGGAGGGGTGAATTGTTTTATGTACTGCGTTTGTAGTATGGCAGGGTGTATTTGTGTAGTTTCGTGTTTTAAAGTAAGTGTTTCTGGAAACACGTATTTGTAGTTGGTAGTGTTGTGTTCGAATAAAAGATGTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4850#0 TCGTGCACTGCTCG-ACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCT 59
consensus_4850#1 CCGCGCTGTTCTTGCGCGAGCAC---AACCGCGTCGCCA-CGGCACTGGCCGCCCTGAAC 56
** ** * ** * *** ** * * ** * **** *** * *
consensus_4850#0 C--CCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATAATGCTGATGGG 117
consensus_4850#1 CGACACTGGGACGACGAGCGGCTGTACCAGGAGACGCGGCGTATCGTCGGCGCAGTGATG 116
* * * ** * * * * *** * ***** * ** * *
consensus_4850#0 CAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGG--AGAACAACCAGAACCTG 175
consensus_4850#1 CAGAAGATTTTCTACAACGAGTACCTGCCGTCGATCGTGGGCCATAGCAAGGCACGCCAG 176
** * * * ** *** * ** * * *** ** *
consensus_4850#0 GAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTG 235
consensus_4850#1 TACGGGCTGCTCGACAGCCACGGGGAGCAGACGGACTTTTACAGTCCCGACGTGAAGCCT 236
* ******* ** * * ** * ** *** ** * * * *
consensus_4850#0 GCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCC--CCGGCCCGTGCCGGTG 293
consensus_4850#1 GCCG---TTTTTAACGAACTGTCCGGGGCAGCTTTCCGTTTCGGCCATTCTACCGTGGAT 293
**** * ** * *** *** * * *** * ** * **
consensus_4850#0 CGATCGCCCC--GCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAA 351
consensus_4850#1 GGAGCGTTTTTGATCCAGCATCGCCATCGCCGCACGGAG--CTGGTACCGATTCAG-GAA 350
** ** * *** **** * ** * ** * *** ** * * * ***
consensus_4850#0 GACCTCCTTCTTCCAGGCCCTGTCCATCCCGAC-CAAGATTTCCAAGGGTACGATTGAAA 410
consensus_4850#1 GTCTTCCTGAACCC--GTCCCGTCTGCTGCAGCGCTCGTTTTTCGACGACTTTCTC---- 404
* * **** ** * ** *** * * * * *** * * * *
consensus_4850#0 TCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGC 470
consensus_4850#1 TTCTCGCTGATGGATC--------AGCCGCAGCAGCAGCTGGACGATTCC---ATCACG- 452
* ** ** * * ***** * ** * * ** **** ****
consensus_4850#0 TGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACG 530
consensus_4850#1 --TTCGGG--GTTGACGCGGTTGCTGTT----TGCGGGCCGCA-ACCCGTTCGGT-TCGG 502
*** * *** * ** *** * *** * *** * ** *** * *
consensus_4850#0 ATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCA 590
consensus_4850#1 ATCTGGCGTCGCTCAACATACAGCGCGGCC--GGGATCATG-CGCTGCGCCCGTACAACG 559
** ** *** ** * * * ** * **** * ** * * * * *
consensus_4850#0 AGTTCCAG-GCTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAA 649
consensus_4850#1 ACTACCGGAGCTGG----GCCGGCCTGGAGCGACTCACTAGCTTCCGAG--CAGTTCCGG 613
* * ** * ***** *** ***** * * * ***** * *
consensus_4850#0 GGAGGCCGAAAC--GGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACG 707
consensus_4850#1 TCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCGGACGATGTGGACCTGTGGGT 673
** ** * ** ** * * *** * * * ***
consensus_4850#0 GCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCC 767
consensus_4850#1 GGGCGGACTGCTGGAGCCCCCGACGCAGGATGGGGCACTGTTTGGCGAAACG-----TTC 728
* ******* ** *** * *** *** * ** * * *
consensus_4850#0 GAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACCAA 827
consensus_4850#1 GCCGCCATCATTAGCGAACTGAGCA-AGGTGTCGCTCGCCTCGGTCATCTGCGCCAACCT 787
* ** * ** * * ** *** ** *** * * **** ** *
consensus_4850#0 GACGACGACCCACGCCGACCGCATGCGCCACAGCAAG-GTCGGTTGTTCCCAGACGGTGT 886
consensus_4850#1 --CGACCAGGCGGACGGGTTTTCCGCGCCCCGGGATGCGTTTAGACAGCCGAGCGAGCAT 845
**** * * * * ***** * * * * ** ** ** * *
consensus_4850#0 GGTTC-CCTGAGCTATATCT-ACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGT 944
consensus_4850#1 AACCCGCCCGTCCCGTGCCAGACGCTAGTCGGGA---TGGATCTGTCCGCCTGGAGGGGT 902
* ** * * * * ** * * *** ** * *** ** * * **
consensus_4850#0 CAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAAT 1004
consensus_4850#1 CACTAGCGGGGAGGGGTGAATTGTTTTATG-----TACTGCGTTTGTAGTATGGCAGG-- 955
** ***** ** *** * * * * * **** * **
consensus_4850#0 ACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACA---AAAG 1061
consensus_4850#1 --GTGTATTTGTGTAGTTTCGTGTTTTAAAGTAAGTGTTTCTGGAAACACGTATTTGTAG 1013
** * *** *** * * * *** * * ** * **
consensus_4850#0 CCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAA 1100
consensus_4850#1 TTGGTAGTGTTGTGTTCGAATAAAAGATGTGCTG----- 1047
*** * * ** * * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||