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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1286 fasta sequence
[GATGGGAACAACCAAATGTTTTTTAAACCACCACACTCGCACTTCACTTCAGTGGAATAAAACGGGAGCTGTGGGTAGCACCGATACCGGGGCGACCGTGCTTGACCGGCTTGTAGGTCATCGAGAACTCGCCCAGATAGTGGCCGATCATGTCCGGCCGGATTTCCGTCTGGTTGAACGTCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTACGCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGCGCACTT-CTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAGCGCC-GACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGACGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTAATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTATGCTCAGCGTGTGGTTTCTGTCCACACTGAGCTGACCTTTGGACACCTCCGTTATCGTTTTGGAGATGTACCGCCCCAGTCAAACTCCGCACCTGGCACTGTCCATGACGTGGACCGAAAGGACCTGTCCAGGAGTCTTCGAGCCGGGCGGCGCGCGGAACCGGGGGCAAACGTGACATCATAAACGATCGACCGCGCAGAAGCAGTGCACCACGAATGCACCGACGTACGCAAGCTTGGTACCTTGCGGCCACGGCTCACGGTCGGACAAGCGGGTAACACGCTACACACGACGATGCTACGATGCAGTCTCCCCGGCGGCACCACCCAGCGACACAGTTCACTGAAGAAAATCGATCGAAATCGAACTACTTCAATATTTCCTACTTCCTCACACAAACTA]
[+] EMBL CNS08MF0 [GATGGGAACAACCAAATGTTTTTTAAACCACCACACTCGCACTTCACTTCAGTGGAATAAAACGGGAGCTGTGGGTAGCACCGATACCGGGGCGACCGTGCTTGACCGGCTTGTAGGTCATCGAGAACTCGCCCAGATAGTGGCCGATCATGTCCGGCCGGATTTCCGTCTGGTTGAACGTCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTACGCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGCGCACTT CTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAGCGCC GACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGACGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTAATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTA ]
[+] EMBL CNS08URU [ CTGGTTGAACGTCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTACGCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGCGCACTTCCTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAG GCCGGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTA ]
[-] EMBL CNS09GZ1 [ TTTCGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTATGCTCAGCGTGTGGTTTCTGTCCACACTGAGCTGACCTTTGGACACCTCCGTTATCGTTTTGGAGATGTACCGCCCCAGTCAAACTCCGCACCTGGCACTGTCCATGACGTGGACCGAAAGGACCTGTCCAGGAGTCTTCGAGCCGGGCGGCGCGCGGAACCGGGGGCAAACGTGACATCATAAACGATCGACCGCGCAGAAGCAGTGCACCACGAATGCACCGACGTACGCAAGCTTGGTACCTTGCGGCCACGGCTCACGGTCGGACAAGCGGGTAACACGCTACACACGACGATGCTACGATGCAGTCTCCCCGGCGGCACCACCCAGCGACACAGTTCACTGAAGAAAATCGATCGAAATCGAACTACTTCAATATTTCCTACTTCCTCACACAAACTA]
consensusID : consensus_4854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[GAATCCCCNAGGTTAAAACGAAATTATCTATCGTGCATTACGTTTACATTTCGGTAGCCGTAGCGTCGCCGAAGGGTCTGGTAGTACCCGTGCTGAGAAATGTGGAAGGTATGAACTACGCCGATATCGAGCTGGCCATCGCTGGACTGGCGGATAAGGCGAAAAAGGGGACGTTGGCCGTAAGGACATGGATGGTGGCACCTTTACATCTCGAACGGTGGAGTGTTCGGATCGCTGCTCGGAGCCCATCATCAATCCTCCGCAGAGCGCATTCTTGGCATGCACGGCATCTTCGAGCGAACCGATCAGCTGTNAAAGGGAACAGGTGGTAATTCCGACCATGATGTACGTANCCTGTACTACGACCATTCGGTTGATTGATGGACGGTGAGGCGTGTCGACCTTCCTCTGCCGCAANGTGAAAGGCCCGATGTACGAAGGATCNCTTNNCATTCTGTTGCTGGCCCGGTCTGTAAAACGAACAGTTAACACAACAATCAAAAACNCCTGGCTGCGTTTCACCGAAGACCGGATCTCTTTTGACNCGAACTCACACATTCTGAGACAGGAAAGTGTCAAAAACAGCAGCGAAA]
[+] EMBL AL692937 [GAATCCCCNAGGTTAAAACGAAATTATCTATCGTGCATTACGTTTACATTTCGGTAGCCGTAGCGTCGCCGAAGGGTCTGGTAGTACCCGTGCTGAGAAATGTGGAAGGTATGAACTACGCCGATATCGAGCTGGCCATCGCTGGACTGGCGGATAAGGCGAAAAAGGGGACGTTGGCCGTAAGGACATGGATGGTGGCACCTTTACATCTCGAACGGTGGAGTGTTCGGATCGCTGCTCGGAGCCCATCATCAATCCTCCGCAGAGCGCATTCTTGGCATGCACGGCATCTTCGAGCGAACCGATCAGCTGTNAAAGGGAACAGGTGGTAATTCCGACCATGATGTACGTANCCTGTACTACGACCATTCGGTTGATTGATGGACGGTGAGGCGTGTCGACCTTCCTCTGCCGCAANGTGAAAGGCCCGATGTACGAAGGATCNCTTNNCATTCTGTTGCTGGCCCGGTCTGTAAAACGAACAGTTAACACAACAATCAAAAACNCCTGGCTGCGTTTCACCGAAGACCGGATCTCTTTTGACNCGAACTCACACATTCTGAGACAGGAAAGTGTCAAAAACAGCAGCGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4854#0 GATGGGAACAACCAAATGTTTTTTAAACCACCACACTCGCACTTCACTTCAGTGGAATAA 60
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 AACGGGAGCTGTGGGTAGCACCGATACCGGGGCGACCGTGCTTGACCGGCTTGTAGGTCA 120
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 TCGAGAACTCGCCCAGATAGTGGCCGATCATGTCCGGCCGGATTTCCGTCTGGTTGAACG 180
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 TCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTAC 240
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 GCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGC 300
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 GCACTTCTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAGCGCCGACTCCA 360
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 ACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGC 420
consensus_4854#1 -------------------------------------------------------GAATC 5
*** *
consensus_4854#0 GCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGACGTAG 480
consensus_4854#1 CCCN--AGGTTAAAACGAAATTATCTATCGTGCATTACGTTTACATTTCGGTAGCCGTAG 63
* ** * * * * * * * * * * * * * * * *****
consensus_4854#0 CGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCA-GTGGTCCGTACCTGTGGTTCCT 539
consensus_4854#1 CGTCGCCGAAGGGTCTGGTAGTACCCGTGCTGAGAAATGTGGAAGGTATG---AACTACG 120
**** * *** *** * ** ** **** * **** *** * *
consensus_4854#0 CTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAA 599
consensus_4854#1 CCGATATCGAGCTGGC-CATCGCTGGACTGGCGG--ATAAG-----GCGAAAAAGGGGAC 172
* ** * * ** ** * * *** ***** * * * ** *
consensus_4854#0 ACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATC 659
consensus_4854#1 GTTGGCC-GTAAGGACATGGATGGTGGCACCTTTACAT---CTCGAACGGTGGAGTGTTC 228
* ** ** * ** * * ** * ** *** ** ** **
consensus_4854#0 CTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 719
consensus_4854#1 GGATCGCTGCTCGGAGCCCATCATCAATCCTCCGCAGAGC--GCATTCTTGGCATGCACG 286
* ** * * **** * * ***** *** ** *
consensus_4854#0 GCCACGTCGCTATGAACGCTTGGCGGCCACAAG---CCAGTAATCCCTGTGGTAACTTTT 776
consensus_4854#1 GCATCTTCGAGCGAACCGATCAGCTGTNAAAGGGAACAGGTGGTAATTCCGACCATGATG 346
** * *** * ** * ** * * * * * ** * * * * *
consensus_4854#0 CTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGC----CAAGCTTT 832
consensus_4854#1 TACGTANCCTGTACTACGACCATTCGGTTGATTGATGGACGGTGAGGCGTGTCGACCTTC 406
* * * *** * * * * *** ** **** * * ***
consensus_4854#0 CGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTATGCTCAGCG 892
consensus_4854#1 CTCTGCCGCAANGTGAAAGGCCCGATGTA--CGAAGGATCNCTTNNCATTCTGTTGCTGG 464
* *** * * * *** * * ** ** * * * * ** * ** ** * *
consensus_4854#0 TGTGGTTTCTG---TCCACACTGAGC-TGACCTTTGGACACCTCCGTTATCGTTTTGGAG 948
consensus_4854#1 CCCGGTCTGTAAAACGAACAGTTAACACAACAATCAAAAACNCCTGGCTGCGTTTCACCG 524
*** * * *** * * * ** * * ** * * ***** *
consensus_4854#0 ATGTACCGCCCCAGTCAAACTCCGCACCTGGCACTGTCCATGACGTGGAC-CGAAAGGAC 1007
consensus_4854#1 AAGACCGGATCTCTTTTGACNCG--AACTCACACATTCTGAGACAGGAAAGTGTCAAAAA 582
* * * * * * ** * * ** *** ** *** * * * * *
consensus_4854#0 CTGTCCAGGAGTCTTCGAGCCGGGCGGCGCGCGGAACCGGGGGCAAACGTGACATCATAA 1067
consensus_4854#1 CAGCAGCGAAA------------------------------------------------- 593
* * * *
consensus_4854#0 ACGATCGACCGCGCAGAAGCAGTGCACCACGAATGCACCGACGTACGCAAGCTTGGTACC 1127
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 TTGCGGCCACGGCTCACGGTCGGACAAGCGGGTAACACGCTACACACGACGATGCTACGA 1187
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 TGCAGTCTCCCCGGCGGCACCACCCAGCGACACAGTTCACTGAAGAAAATCGATCGAAAT 1247
consensus_4854#1 ------------------------------------------------------------
consensus_4854#0 CGAACTACTTCAATATTTCCTACTTCCTCACACAAACTA 1286
consensus_4854#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||