These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAATACGACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGTGAGCGAGAAAGCATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATTTCGTGCTCGGGGCGGTGCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCAAGCTGGTGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATTTGCGAAGATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCGTGGTGAAAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTGTGTGCAGTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTTTGTGTAGAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCGGATACACCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCAAAGATTTTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT] [+] EMBL BM632760 [CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAATACGACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGTGAGCGAGAAAGCATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATTTCGTGCTCGGGGCGGTGCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCAAGCTGGTGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATTTGCGAAGATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCGTGGTGAAAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTGTGTGCAGTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTTTGTGTAGAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCGGATACACCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCAAAGATTTTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT] consensusID : consensus_4857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCCTACGATCACTGCGTCCAATGGACTCGGAAACTATTTTCAAGTCCGTACAAAAGACTCACCATCTCGTAACGGTAGAGCAAGGATGGCCCCAGGGTGGCATTGGTTCAGAAATTTGTGCACGTATCATGGAGCACGAGACATTCTTCCACCTGGACGCTCCGATATGGCGTGTAACTGGCGCCGACGTCCCTATGCCTTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCACAAGGTACCTGATGTTGTCACTGCCGTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATCCTATCCATTCAAGTAACGTGTTCTTCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAAGTTNGAAGATGATTTCGATGAATAGCGGATGCATGANTTAAAGGTTCG] [+] EMBL BX468937 [GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCCTACGATCACTGCGTCCAATGGACTCGGAAACTATTTTCAAGTCCGTACAAAAGACTCACCATCTCGTAACGGTAGAGCAAGGATGGCCCCAGGGTGGCATTGGTTCAGAAATTTGTGCACGTATCATGGAGCACGAGACATTCTTCCACCTGGACGCTCCGATATGGCGTGTAACTGGCGCCGACGTCCCTATGCCTTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCACAAGGTACCTGATGTTGTCACTGCCGTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATCCTATCCATTCAAGTAACGTGTTCTTCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAAGTTNGAAGATGATTTCGATGAATAGCGGATGCATGANTTAAAGGTTCG] consensusID : consensus_4857#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCTGTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGAGTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGGACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGTCCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCCATCGGTGCCGCCGGCAAACTGAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA] [+] EMBL BX609655 [GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCTGTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGAGTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGGACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGTCCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCCATCGGTGCCGCCGGCAAACTGAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA] consensusID : consensus_4857#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 108 fasta sequence [CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGAGGGAGAGGGAACAACAATAACAACACTACATAAACATAGTAGATAGGTTACTACTTAAGGAA] [+] EMBL BX613060 [CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGAGGGAGAGGGAACAACAATAACAACACTACATAAACATAGTAGATAGGTTACTACTTAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4857#0 ---CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAA 57 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 ----------------GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCC 44 consensus_4857#2 GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCT 60 consensus_4857#0 TACGACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGT-GAGCGAGA 116 consensus_4857#3 -----CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGA-GGGAGAGG 54 consensus_4857#1 TACGATCACT-GCGTCCAATGGACTCGGAAACTATTTTCAAGTCCGTACAA-AAGACTCA 102 consensus_4857#2 GTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGA 120 * * * * * consensus_4857#0 AAGCATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATT--TCGTGCTCGG 174 consensus_4857#3 GAACAACAATAACAACACTACATAAACATA--GTAG-----ATAGGTT--AC-TACTTAA 104 consensus_4857#1 CCATCTC-GTAACGGTAGAGCAAGGATGGCCCCAGGGTGGCATTGGTT--CAGAAATTTG 159 consensus_4857#2 GTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGG 180 * * * * * * * * consensus_4857#0 GGCGGTGCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCA 234 consensus_4857#3 GGAA-------------------------------------------------------- 108 consensus_4857#1 TGCA---CGTATCATGGAGCACGAGACATTCTTCCACCTGGACGCTCCGATATGGCGTGT 216 consensus_4857#2 ACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGT 240 consensus_4857#0 AGCTGGTGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATT 294 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 AACTGGCGCCGACGTCCCTATGCCTTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCAC 276 consensus_4857#2 CCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCC-ATCGGTGCCGCCGGCAAAC 299 consensus_4857#0 TGCGAAGATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCG 354 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 AAGGTACCTGATGTTGTCACTGCCGTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATC 336 consensus_4857#2 TGAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA----------------- 342 consensus_4857#0 TGGTGAAAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTG 414 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 CTATCCATTCAAGTAACGTGTTCTTCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAA 396 consensus_4857#2 ------------------------------------------------------------ consensus_4857#0 TGTGCAGTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTT 474 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 GTTNGAAGATGATTTCGATGAATAGCGGATGCATGANTTAAAGGTTCG------------ 444 consensus_4857#2 ------------------------------------------------------------ consensus_4857#0 TGTGTAGAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCG 534 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 ------------------------------------------------------------ consensus_4857#2 ------------------------------------------------------------ consensus_4857#0 GATACACCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCA 594 consensus_4857#3 ------------------------------------------------------------ consensus_4857#1 ------------------------------------------------------------ consensus_4857#2 ------------------------------------------------------------ consensus_4857#0 AAGATTTTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT 646 consensus_4857#3 ---------------------------------------------------- consensus_4857#1 ---------------------------------------------------- consensus_4857#2 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||