cluster # 4859

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4859 cluster # 4859 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4859#0 length = 752 sequences # 1

consensus_4859#1 length = 690 sequences # 2
consensus_4859#2 length = 650 sequences # 1

consensusID : consensus_4859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 752
fasta sequence

                              [TGGCATTTCGAACGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACAAGACGACGACCCACGCCGACCGCATGCGCCAGCAGCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGGGG]

[+] EMBL CNS08YA2             [TGGCATTTCGAACGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACAAGACGACGACCCACGCCGACCGCATGCGCCAGCAGCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGGGG]




>consensus_4859#0
TGGCATTTCGAACGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTT
TACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAA
CTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGC
TGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCAT
CGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAA
CCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAA
GGGCGATCTGGCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCG
ACACAAGACGACGACCCACGCCGACCGCATGCGCCAGCAGCAGGTCGGTTGTTCCCAGAC
GGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACT
CGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAA
AATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTAACACAAAAG
CCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGCCACATGTGCCCGGGCTGGGG

consensusID : consensus_4859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 690
fasta sequence

                              [CCGTCGGATTTGTGCAACAGTAATAAAAAAGAACAACCAAACATTGTGCAACTTTCCCCATCTTTCACTTCACAGCCATTTGTTTTAGCGTGACAAAAAACACGATTTTACCCTCGGCCAGAGTTTTTAGTTTAACCAGTAGCAAAAACCACCAACCATTGAACGCTTCACAGGAGGTGCTTGGTGGTGGTGTGGGACGCATATGAGGGAACGGGAAGCATCGGTACAGATTGCATCGTTATCTAATTTCTAGGCCGTGGTCGGTTTGCTTCGTCGCTTGCATTGCATTGCCTGTCCCTTCGCCTCATTCGGCGACGGAGTAAGATTGCAGTAGGACGGCCCTACGGGAAGCGCGCACAGTGTTGGTTTAGCGATCGGGCCGTGGAGTATGTGCGTTCGGCTGTGAATAGTGTAGCTGGAAGTACATCGTAACCAATCCTAATTGTAGTCCATCAACGTTCAAGTCCTTTTTGCTAGTCGGTGAAAGTAGTGCTGTGAGAAGTAGGCAATGGCAACTGGCGAAAAAGAGTCCAGCGACAATATGATCTCGCTCGGATGGAAATTTCTCAACAAGGAAACGTTTGGCAATGGCGAGCGTGCCAACTATGTGAACAGTCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCT]

[+] EMBL BM579775             [CCGTCGGATTTGTGCAACAGTAATAAAAAAGAACAACCAAACATTGTGCAACTTTCCCCATCTTTCACTTCACAGCCATTTGTTTTAGCGTGACAAAAAACACGATTTTACCCTCGGCCAGAGTTTTTAGTTTAACCAGTAGCAAAAACCACCAACCATTGAACGCTTCACAGGAGGTGCTTGGTGGTGGTGTGGGACGCATATGAGGGAACGGGAAGCATCGGTACAGATTGCATCGTTATCTAATTTCTAGGCCGTGGTCGGTTTGCTTCGTCGCTTGCATTGCATTGCCTGTCCCTTCGCCTCATTCGGCGACGGAGTAAGATTGCAGTAGGACGGCCCTACGGGAAGCGCGCACAGTGTTGGTTTAGCGATCGGGCCGTGGAGTATGTGCGTTCGGCTGTGAATAGTGTAGCTGGAAGTACATCGTAACCAATCCTAATTGTAGTCCATCAACGTTCAAGTCCTTTTTGCTAGTCGGTGAAAGTAGTGCTGTGAGAAGTAGGCAATGGCAACTGGCGAAAAAGAGTCCAGCGACAATATGATCTCGCTCGGATGGAAATTTCTCAACAAGGAAACGTTTGGCAATGGCGAGCGTGCCAACTATGTGAACAGTCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCT]
[+] EMBL BM582486             [            TGCAACAGTAATAAAAAAGAACAACCAAACATTGTGCAACTTTCCCCATCTTTCACTTCACAGCCATTTGTTTTAGCGTGACAAAAAACACGATTTTACCCTCGGCCAGAGTTTTTAGTTTAACCAGTAGCAAAAACCACCAACCATTGAACGCTTCACAGGAGGTGCTTGGTGGTGGTGTGGGACGCATATGAGGGAACGGGAAGCATCGGTACAGATTGCATCGTTATCTAATTTCTAGGCCGTGGTCGGTTTGCTTCGTCGCTTGCATTGCATTGCCTGTCCCTTCGCCTCATTCGGCGACGGAGTAAGATTGCAGTAGGACGGCCCTACGGGAAGCGCGCACAGTGTTGGTTTAGCGATCGGGCCGTGGAGTATGTGCGTTCGGCTGTGAATAGTGTAGCTGGAAGTACATCGTAACCAATCCTAATTGTAGTCCATCAACGTTCAAGTCCTTTTTGCTAGTCGGTGAAAGTAGTGCTGTGAGAAGTAGGCAATGGCAACTGGCGAAAAAGAGTCCAGCGACAATATGATCTCGCTCGGATGGAAATTTCTCAACAAGGAAACGTTTGGCAATGGCGAGCGTGCCAACTATGTGAACAGTCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGA                   ]




>consensus_4859#1
CCGTCGGATTTGTGCAACAGTAATAAAAAAGAACAACCAAACATTGTGCAACTTTCCCCA
TCTTTCACTTCACAGCCATTTGTTTTAGCGTGACAAAAAACACGATTTTACCCTCGGCCA
GAGTTTTTAGTTTAACCAGTAGCAAAAACCACCAACCATTGAACGCTTCACAGGAGGTGC
TTGGTGGTGGTGTGGGACGCATATGAGGGAACGGGAAGCATCGGTACAGATTGCATCGTT
ATCTAATTTCTAGGCCGTGGTCGGTTTGCTTCGTCGCTTGCATTGCATTGCCTGTCCCTT
CGCCTCATTCGGCGACGGAGTAAGATTGCAGTAGGACGGCCCTACGGGAAGCGCGCACAG
TGTTGGTTTAGCGATCGGGCCGTGGAGTATGTGCGTTCGGCTGTGAATAGTGTAGCTGGA
AGTACATCGTAACCAATCCTAATTGTAGTCCATCAACGTTCAAGTCCTTTTTGCTAGTCG
GTGAAAGTAGTGCTGTGAGAAGTAGGCAATGGCAACTGGCGAAAAAGAGTCCAGCGACAA
TATGATCTCGCTCGGATGGAAATTTCTCAACAAGGAAACGTTTGGCAATGGCGAGCGTGC
CAACTATGTGAACAGTCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAAC
GTACATCTCGAAAAAGCTGTCCCGCTACCT

consensusID : consensus_4859#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [CCGCGGACGCGTGGGGTTCTGCGTATCTCGATTAAGTTACATCTCAATTATCTATTTTAAAGCTTGCGTCACTTTTTAGGGTAGTGTTAGATTCAAGCCATAGACAAAAACGCACTTATGAAATGAATAATCTTTTCCAAAAGTGCTATAAATTGGGTGGGGACGTTTCAAGTGGCACTATTTCGGAAAGAGCGGTAAAAGGCTATAGAAAAGAAGGCATAATGCTGACCTGACCCTTGAGCCGCATCATCAACAGCAGCAGCTGCAGCAGAGGTTGGGTGCGCTGAGGATCCCGGCAGAAGCAGACAACGTTAAACTAACTCAGGATCCCAGTTGGACGACTGAGGTGAGGCCGAGCGGTACCAGCTTAAAGGAAGGATAAAAGCATTGAACCGGAGGAGGCTCCTCGTATAAAAGTAAAGCTTTTGCAACAGACAAAGAGTACAGCTGCAACAACAATGGCGGAAGCAGATATGCCAACTTTCAAATGCGTGCTGGTCGGCGACGGTGGTACCGGCAAAACGACATTCGTCAAACGTCATATGACGGGTGAGTTTGAAAAGAAGTACGTCGCCACCCTCGGCGTAGAGGTGCATCCACTGGTATTCCACACGAACCGTGGTGCTATCCGGTTCAATGTGTGGGGACAC]

[+] EMBL BM657247             [CCGCGGACGCGTGGGGTTCTGCGTATCTCGATTAAGTTACATCTCAATTATCTATTTTAAAGCTTGCGTCACTTTTTAGGGTAGTGTTAGATTCAAGCCATAGACAAAAACGCACTTATGAAATGAATAATCTTTTCCAAAAGTGCTATAAATTGGGTGGGGACGTTTCAAGTGGCACTATTTCGGAAAGAGCGGTAAAAGGCTATAGAAAAGAAGGCATAATGCTGACCTGACCCTTGAGCCGCATCATCAACAGCAGCAGCTGCAGCAGAGGTTGGGTGCGCTGAGGATCCCGGCAGAAGCAGACAACGTTAAACTAACTCAGGATCCCAGTTGGACGACTGAGGTGAGGCCGAGCGGTACCAGCTTAAAGGAAGGATAAAAGCATTGAACCGGAGGAGGCTCCTCGTATAAAAGTAAAGCTTTTGCAACAGACAAAGAGTACAGCTGCAACAACAATGGCGGAAGCAGATATGCCAACTTTCAAATGCGTGCTGGTCGGCGACGGTGGTACCGGCAAAACGACATTCGTCAAACGTCATATGACGGGTGAGTTTGAAAAGAAGTACGTCGCCACCCTCGGCGTAGAGGTGCATCCACTGGTATTCCACACGAACCGTGGTGCTATCCGGTTCAATGTGTGGGGACAC]




>consensus_4859#2
CCGCGGACGCGTGGGGTTCTGCGTATCTCGATTAAGTTACATCTCAATTATCTATTTTAA
AGCTTGCGTCACTTTTTAGGGTAGTGTTAGATTCAAGCCATAGACAAAAACGCACTTATG
AAATGAATAATCTTTTCCAAAAGTGCTATAAATTGGGTGGGGACGTTTCAAGTGGCACTA
TTTCGGAAAGAGCGGTAAAAGGCTATAGAAAAGAAGGCATAATGCTGACCTGACCCTTGA
GCCGCATCATCAACAGCAGCAGCTGCAGCAGAGGTTGGGTGCGCTGAGGATCCCGGCAGA
AGCAGACAACGTTAAACTAACTCAGGATCCCAGTTGGACGACTGAGGTGAGGCCGAGCGG
TACCAGCTTAAAGGAAGGATAAAAGCATTGAACCGGAGGAGGCTCCTCGTATAAAAGTAA
AGCTTTTGCAACAGACAAAGAGTACAGCTGCAACAACAATGGCGGAAGCAGATATGCCAA
CTTTCAAATGCGTGCTGGTCGGCGACGGTGGTACCGGCAAAACGACATTCGTCAAACGTC
ATATGACGGGTGAGTTTGAAAAGAAGTACGTCGCCACCCTCGGCGTAGAGGTGCATCCAC
TGGTATTCCACACGAACCGTGGTGCTATCCGGTTCAATGTGTGGGGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4859#1      ---------------------------------------------------------CCG 3
consensus_4859#2      -------------------------------------------------CCGCGGACGCG 11
consensus_4859#0      TGGCATTTCGAACGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTT 60
                                                                                  

consensus_4859#1      TCGGATT-TGTGCAACAGTAATAAAAAAGAAC-----AACCAAACATTGTGCAACTTTCC 57
consensus_4859#2      TGGGGTTCTGCGTATCTCGATTAAGTTACATCTC---AATTATCTATTTTAAAGCTTGCG 68
consensus_4859#0      TACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAA 120
                      *  *  *            *  **              *  *   *   *  *  *    

consensus_4859#1      CCATCTTTCACTTCACAGCCATTTGTTTTAGCGTGACAAAAAACACGATTTTACCCTCGG 117
consensus_4859#2      TCACTTTTTAGGGTAGTG---TTAGATTCA----AGCCATAGACAAAAACGCACTTATGA 121
consensus_4859#0      CTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGC 180
                        *  *   *              * *  *      *   * *               * 

consensus_4859#1      CCAGAGTTTTTAGTTTAACCAGTAGCAAAAACCACCAACCATTGAACGCTTCACAGGAGG 177
consensus_4859#2      AATGAATAATCTTTTCCAAAAGTGCTATAAATTGGGTGG----GGACGTTTCAAGTGGCA 177
consensus_4859#0      TGACAATGTCGGCTCCCGTCAG--ATGCAAACCATCCGTA---TGTCGCTCCGCGGTTCG 235
                          * *      *      **      ***               ** * *        

consensus_4859#1      TGCTTGGTGGTGGTGTGGGACGCATATGAGGGAACGGGAAGC-ATCGGTACAGATTGCAT 236
consensus_4859#2      CTATTTCGGAAAGAGCGGTA-AAAGGCTATAGAAAAGAAGGC-AT-AATGCTGACCTGAC 234
consensus_4859#0      GCCATCGTGCTGATG-GGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGA 294
                          *   *     * ** *   *    *         * ** **        *      

consensus_4859#1      CGTT-ATCTAATTTCTAGGCCGTGGTCGGTTTGCTTCGTCGCTTGCATTGCATTGCCTGT 295
consensus_4859#2      CCTTGAGCCGCATCATCAACAGCAGCAG--CTGCAGCAGAGGTTG-GGTGCGCTGAGGAT 291
consensus_4859#0      GAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAA-CGTGGGCTTCGTGT 353
                           * *             *  *        *  *   *       **   *     *

consensus_4859#1      CCCTTC-GCCTCATTCGGCGACGGAGTAA-----GATTGCAGTAGGACGGCCCTACGGGA 349
consensus_4859#2      CCCGGCAGAAGCAGACAACGTTAAACTAACTCAGGATCCCAGTTGGACGAC--TGAGGTG 349
consensus_4859#0      TCACCAAGGGCGATCTGGCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATT 413
                       *     *    *     *     *  *      *      *      * *  *  *   

consensus_4859#1      AGCGCGCACAGTGTTGGTTTAGCGATCGGGCCGTGGAGTATGTGCGTTCGGC-TGTGAAT 408
consensus_4859#2      AGGCCGAGCGGTACCAGCTTAAAGGAAGGATAAAAGCAT-TGAACCGGAGGA-GGCTCCT 407
consensus_4859#0      AA---ATGCGACACAAGACGACGACCCACGCCG-ACCGCATGCGCCAGCAGCAGGTCGGT 469
                      *       *       *   *                   **  *     *   *    *

consensus_4859#1      AGTGT--AGCTGGAAGTACATCGTAACCAATCCTAATTGTAGTC----CATC--AACGTT 460
consensus_4859#2      CGTAT--AAAAGTAAAGCTTTTGCAACAGACAAAGAGTACAGCTGCAACAAC--AATGGC 463
consensus_4859#0      TGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGC 529
                       **    *   *             *   *     * *   *      *     *     

consensus_4859#1      CAAGTCCTTTTTGCTA--GTCGGTGAAAGTAGTGCTGTGAGAAGTAGGCAATGGCAACTG 518
consensus_4859#2      GGAAGCAGATATGCCA--ACTTTCAAATGC-GTGCTG---GTCGGCGACGGTGGTA-CCG 516
consensus_4859#0      GAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTG 589
                                  *  *         *  *       *      *  * *  *       *

consensus_4859#1      --GCGAAAAAGAGTCCAG-CGACAATATGATCTCG-CTCGGATGGAAATTTCTCAACAAG 574
consensus_4859#2      --GCAAAACGACATTCGT-CA--AACGTCATATGA-C--GGGTG--AGTTTGAAAAGAAG 566
consensus_4859#0      TTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAG 649
                         *  *      * *           * *      *      *  *        * ***

consensus_4859#1      GAAACGTTTGGCAATGGCGAGCGTGCCAACTATGTGAACAGTCCGCACGTGATTGCGATG 634
consensus_4859#2      TACGTCGCCACCCTCGGCGTAGAGGTGCATC-CACTGGTATTCCACACG-AACCGTGGTG 624
consensus_4859#0      TAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAACAAAAAAAAAA 709
                       *         *    * *                    * ***  *    *        

consensus_4859#1      GTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCT 690
consensus_4859#2      CTATCCGGTTCAATGTGTGGGGACAC------------------------------ 650
consensus_4859#0      AAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGGGG------------- 752
                                              **