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Anopheles gambiae
cluster # 4861 cluster # 4861       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4861#0 length = 1001 sequences # 3  
consensus_4861#1 length = 550 sequences # 1  

consensusID : consensus_4861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1001
fasta sequence
                              [GGATTCG-AGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG-CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACGATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGGCTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGGTGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA]

[+] EMBL CNS09JQ8             [GGATTCG AGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACGATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGGCTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGGTGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA]
[+] EMBL CNS099SD             [ GATTCGTATTGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACG CTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS09PWQ             [                     aAAGGTGTTGG TGCGTG AG TATTTTTTGCG CCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGG CGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAG GCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACG                                                                                                                                                                         ]


>consensus_4861#0 GGATTCGAGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAAT TCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGG ACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCG TCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGG ACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCA CGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCTGTACGATGCGGGCGAGGGCAA GCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCT CGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAA GAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGAT GGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGA TGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGA TGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGG CGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAA GGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACG ATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGG CTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGG TGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA



consensusID : consensus_4861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGCTCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTATGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAAGTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTACCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGTTGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC]

[+] EMBL BM598503             [CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGCTCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTATGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAAGTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTACCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGTTGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC]


>consensus_4861#1 CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAA CGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGC TCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTA TGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAA GTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAG CTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTA CCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGT TGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGA CGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACT GGAGATTTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4861#0      GGATTCGAGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAAT 60
consensus_4861#1      ------------------------------------------------------------
                                                                                  

consensus_4861#0      TCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGG 120
consensus_4861#1      ------------------------------------------------------------
                                                                                  

consensus_4861#0      ACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCG 180
consensus_4861#1      ------------------------------------------------------------
                                                                                  

consensus_4861#0      TCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGG 240
consensus_4861#1      ------------------------------------------------------------
                                                                                  

consensus_4861#0      ACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCA 300
consensus_4861#1      ------------------------------------------------------------
                                                                                  

consensus_4861#0      CGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCTGTACGATGCGGGCGAGGGCAA 360
consensus_4861#1      --------------------------------------------------CCGTTGACTT 10
                                                                         **  * *  

consensus_4861#0      GCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCT 420
consensus_4861#1      GCGGGGCTTACTCGATGGGGC-TGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATA 69
                      **  ***     *** *  *  *         * *** *  **    *   ***      

consensus_4861#0      CGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAA 480
consensus_4861#1      GGAGAAATCGGTCAATGCG-GTGAAAACCAAGCCTGCTGCTCAG--AAGCCGGCTCAGAA 126
                       ****    * ** * * *    * ** *   ** **    *     *** ***   ***

consensus_4861#0      GAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGAT 540
consensus_4861#1      GAATGTGCTGCGCGGCAAAAAT-----CCCATCAAGAAGAAGCGTGAGCACCTTCGGTAT 181
                      ** ** **** ****  *   *       *    **    * ****     * **   **

consensus_4861#0      GGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGA 600
consensus_4861#1      GGCATCG-ATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTT---TGA 237
                      **** ** * * *     **       * ****    ******* *** * *     ***

consensus_4861#0      TGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGA 660
consensus_4861#1      AAAGTATCTGA--AGGAGCGCTTTAAGGTAAACGGAAA--GGCCGGCA--ACCTCGGCAG 291
                        ** * ****   *** *  * *   *    **** *  *  * ***  ** *      

consensus_4861#0      TGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGG 720
consensus_4861#1      CAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTC-- 349
                        *  *            * * **** *  * **  ** *     * * *    ** *  

consensus_4861#0      CGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAA 780
consensus_4861#1      ----TCCAAGCGCTACCT----GAAGTACTTGACCAGG---AAGTACTTG-AAGAAGAAC 397
                          * ******    **    * * *  * * *   *   **  ** ** ** * *** 

consensus_4861#0      GGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACG 840
consensus_4861#1      AGTCTCCGCGACTGGATC-CGTGT-TGTGTCCAACGATAAGGATTTGTA-CGAGCTG-CG 453
                       *     *    ** *** * * * *   **  *  * *    **** * *****   **

consensus_4861#0      ATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGG 900
consensus_4861#1      ATACTTCCGAATCA-GCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTG 512
                      *** **  * * *   **   ***   *** *   **  * ****   *     ***  *

consensus_4861#0      CTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGG 960
consensus_4861#1      CTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC---------------------- 550
                      **     *  * * *   * *        *  * ** *                      

consensus_4861#0      TGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA 1001
consensus_4861#1      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)