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Anopheles gambiae
cluster # 4862 cluster # 4862       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4862#0 length = 1007 sequences # 3  
consensus_4862#1 length = 532 sequences # 1  

consensusID : consensus_4862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1007
fasta sequence
                              [CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCATTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACCAGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGCAGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCAGCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAAGCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGTCCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGGACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGTGGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGGCTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGCGTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTTAGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGCACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTTGCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTGATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGGGGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATCGTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT]

[+] EMBL BM656191             [CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCATTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACCAGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGCAGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCAGCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAAGCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGTCCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGGACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGTGGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGGCTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGCGTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTTAGCAGCAACGATCCGTTCC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM633120             [                                                                                                                                                                                                                                                                                                                                             ccgTGGTACACACCGCAATACAGCAGTCCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGGACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCTACCGATCCGTACTTCCCGTTCCAGTGGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGGCTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCAT GGACGACGGCGTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTTAGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGCACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTTGCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTGATCGAGGCGAACTCGATGGG                                                                                                                                                   ]
[+] EMBL BX610558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGTTCAATAGCCATGGCACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTTGCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTGATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGGGGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATCGTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT]


>consensus_4862#0 CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCA TTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACC AGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGC AGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCA GCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAA GCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGT CCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGG ACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGT GGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGG CTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGC GTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTT AGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGC ACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTT GCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTG ATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGG GGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATC GTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT



consensusID : consensus_4862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [CCGGAAAGGTTGGCCGCGCACTTCCGTCGCTTATCGGGCCCGTGTCTGTGCCTGTATGTGTGTGTGTGGATAAGTGAAAGCACATTTGGAAAATTTTAAAAGCACAGCAGGGAAAACAGTTCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGCGGCTTAACGGAGGTTGTAGTGCTGCTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCATATCGCTCGGAGAGCGCCTGCCAAATGGGGCCTCGGTTTAGTGCAAATCAGTAGCTGTGCGTGTGCTTTGTAACGGGAAGCAGAAGAAGCAGGAGCGGCCCTTCCGAACAAACCTGCACCGGAAGCACGGAGACACACAAAAACCGAAAGGGGGACACGCGCGAGCAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCATCAACGCCAACCATGTTCGTGAAGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGCCTGTTTGGCATTGGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA]

[+] EMBL BM636666             [CCGGAAAGGTTGGCCGCGCACTTCCGTCGCTTATCGGGCCCGTGTCTGTGCCTGTATGTGTGTGTGTGGATAAGTGAAAGCACATTTGGAAAATTTTAAAAGCACAGCAGGGAAAACAGTTCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGCGGCTTAACGGAGGTTGTAGTGCTGCTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCATATCGCTCGGAGAGCGCCTGCCAAATGGGGCCTCGGTTTAGTGCAAATCAGTAGCTGTGCGTGTGCTTTGTAACGGGAAGCAGAAGAAGCAGGAGCGGCCCTTCCGAACAAACCTGCACCGGAAGCACGGAGACACACAAAAACCGAAAGGGGGACACGCGCGAGCAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCATCAACGCCAACCATGTTCGTGAAGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGCCTGTTTGGCATTGGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA]


>consensus_4862#1 CCGGAAAGGTTGGCCGCGCACTTCCGTCGCTTATCGGGCCCGTGTCTGTGCCTGTATGTG TGTGTGTGGATAAGTGAAAGCACATTTGGAAAATTTTAAAAGCACAGCAGGGAAAACAGT TCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGCGGCTTAACGGAGGTTGTAGTGCTG CTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCATATCGCTCGGAGAGCGCCTGCCAAA TGGGGCCTCGGTTTAGTGCAAATCAGTAGCTGTGCGTGTGCTTTGTAACGGGAAGCAGAA GAAGCAGGAGCGGCCCTTCCGAACAAACCTGCACCGGAAGCACGGAGACACACAAAAACC GAAAGGGGGACACGCGCGAGCAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCAT CAACGCCAACCATGTTCGTGAAGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGC CTGTTTGGCATTGGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4862#0      CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCA 60
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      TTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACC 120
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      AGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGC 180
consensus_4862#1      ------CCGGAAAGGTTGGCCGCGCACTTCCGTCGC----TTATCG-GGCCCGTGTCTGT 49
                             **    * *   * ** *  *** *  **    * * **  *** *     * 

consensus_4862#0      AGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCA 240
consensus_4862#1      GCCTG---TATGTGTGTGTGTGGATAAGTGAAAGC--ACATTTGGAAAATTTTAAAAGCA 104
                        ***    * * *  **  * *   * ** *  *  * ******   *  **    ***

consensus_4862#0      GCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAA 300
consensus_4862#1      CAGCAGGGAAAACAGTTCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGC--GGCTTA 162
                           ** **     *** *  * *** *   ** *   **  ** *    *  ***  *

consensus_4862#0      GCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGT 360
consensus_4862#1      ACGGAGGTTGTA-GTGC-TGCTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCAT---- 216
                       *        ** * *  ****      **  *   *  ***     *  *  **     

consensus_4862#0      CCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGG 420
consensus_4862#1      ---------ATCGCTCGGAGAGCGCCTGCCAA-ATGGGGCCTCGGTTTAGTGCAAATCAG 266
                               * ***    ** *** ** **   ***  * * ** *  * * **   * *

consensus_4862#0      ACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGT 480
consensus_4862#1      TAGCTGTGCGTGTGCTTTGTAACGGGAA---GCAGAAGAAGCAGGAGCGGCCCTTCCGAA 323
                           * **  * *    **  ** ***   ** **   * * * *    ** ****   

consensus_4862#0      GGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGG 540
consensus_4862#1      CAAACCTGCACCGGAAGCACGGAGACACACAAAAACCGAAAGGGGGAC---ACGCGCGAG 380
                         ** ** *    * *     * **      **  ****    *  *   *** **  *

consensus_4862#0      CTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGC 600
consensus_4862#1      CAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCATCAACGCCA----ACCATGTT 436
                      * **   ***     *  * *  ** ****     * ** *  *  **    ** * *  

consensus_4862#0      GTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTT 660
consensus_4862#1      CGTGA--AGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGCCTGTTT--GGCATT 492
                        ***  * * ** ***  *  *** * *   *  *   *      *   **  *   **

consensus_4862#0      AGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGC 720
consensus_4862#1      GGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA-------------------- 532
                       ** *** **   **  *      **  * *   * * *                     

consensus_4862#0      ACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTT 780
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      GCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTG 840
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      ATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGG 900
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      GGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATC 960
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      GTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT 1007
consensus_4862#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)