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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence
[CCCGGGTTAAAGCAGCACACTGCATCTTTTGTGTCACCTATCCCCTAAATCAACCTGTTAAAGCCAACCGGGCGCAAGAGATAAAGGAAGGAAAAAAGGCACGCGAAAAAGATTGTGATAAGAGAATTTTAAGTATGTATATTTTGTATTATAAGTGGACCGCATCATCCATCCCCCCGGTGTGCCTGCAGATCCCATTGAAGCGGTGTGCTGNGGCAGAAGCTTTCTGGTTTCGGCGTCTTTTTAAACGTATATTAGTNNTGTACTTGTGATGAACCATTGTATCTATTCGGAAGCAGTAACATTGTATTGCGCGCGCACCACAGTCATTGAAAGAAGAAGCATCGGAGCACAGGACGGTTGNAGGTTGAGATAGCAACGCNGCTGTGAAGGAGCGACTNNGTTGTNGCGATATGTGTTGTAAGGCGTACGNAAGTANAATGTTATCCCAACCCCGTATTACCGTCTATAAGGACCCAACCCTACAGGACAAAACCGAACCAGATGAACAGACGCTCTCCCTAGCGTAAGCCTCGCGGCTCGTCTACCCCGTACAGNTTGTACAANAAAGCGGCTACTTNACCCTATATCGTAGTCGATGTGCAAGGGAAGAAGGCCCTCTTCATAATTGGAACCAAACCCGGCNTCGCAATACCAANTGNCCCGCCCCACGGAACACAGNGGGAAGCCACTTCACGAACCCCCCCGACCACCCGCGCCGCCGGAATTTCCGACGCTNACTNAACGCGGNAAATTGNACAACATACCCCTTGACATACACCGGAATACCGGGCCCCTCGCGCACACTGCGCANACC]
[+] EMBL AL693385 [CCCGGGTTAAAGCAGCACACTGCATCTTTTGTGTCACCTATCCCCTAAATCAACCTGTTAAAGCCAACCGGGCGCAAGAGATAAAGGAAGGAAAAAAGGCACGCGAAAAAGATTGTGATAAGAGAATTTTAAGTATGTATATTTTGTATTATAAGTGGACCGCATCATCCATCCCCCCGGTGTGCCTGCAGATCCCATTGAAGCGGTGTGCTGNGGCAGAAGCTTTCTGGTTTCGGCGTCTTTTTAAACGTATATTAGTNNTGTACTTGTGATGAACCATTGTATCTATTCGGAAGCAGTAACATTGTATTGCGCGCGCACCACAGTCATTGAAAGAAGAAGCATCGGAGCACAGGACGGTTGNAGGTTGAGATAGCAACGCNGCTGTGAAGGAGCGACTNNGTTGTNGCGATATGTGTTGTAAGGCGTACGNAAGTANAATGTTATCCCAACCCCGTATTACCGTCTATAAGGACCCAACCCTACAGGACAAAACCGAACCAGATGAACAGACGCTCTCCCTAGCGTAAGCCTCGCGGCTCGTCTACCCCGTACAGNTTGTACAANAAAGCGGCTACTTNACCCTATATCGTAGTCGATGTGCAAGGGAAGAAGGCCCTCTTCATAATTGGAACCAAACCCGGCNTCGCAATACCAANTGNCCCGCCCCACGGAACACAGNGGGAAGCCACTTCACGAACCCCCCCGACCACCCGCGCCGCCGGAATTTCCGACGCTNACTNAACGCGGNAAATTGNACAACATACCCCTTGACATACACCGGAATACCGGGCCCCTCGCGCACACTGCGCANACC]
consensusID : consensus_4867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACAGAGCTGAGGCAGCAACTTACTGTTGGCTAGTGCGTGTGTTTGTCTCTGTGTTGTTTTGGTGTGATTAATTAAAGCGAAAAAATGTCCTCATTTGCTGCACTCCGATTCGCTCCCCGGTTGCTCACCGGCAATGCCTCCCATCGGTTGGTGGCGGCGGCCACGCAGCGGAATTCCTACTTTACCTACTCGAACCAAATTTCGCAGCCGCTCGAGCGTGAGCCCAAGTACACCACGGCGGAGGAAGCCGTCAAAGTTATCAAATCAGGGGACATTGTGTTCGCGCAGGGTGCAGCGGCCACCCCGGTCCATCTGCTCGATGCGATGACCAAGCACGGCATGGAGAACAATCTGCGCGACATCACCGTGACGCACATGCACACCGAAGGGCCGGCTTCGTACTGCAAACCCGAGTGCAAGGACGTGTTCCGCTCGAAGTCACTGTTCATGGGCGGCAACGTGCGGGCAGCTGTGGCCGATGGCCGCGGTGATGCGGTCCCGATCTTCCTGCACGAAATTCCGCTGCTGTTCCGGCGCAAGCTCATCCAGCCGGATGTGGCAATCGTGTCGGTGTCGCCACCGGACAACCACGGCTACT]
[+] EMBL BM575104 [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACAGAGCTGAGGCAGCAACTTACTGTTGGCTAGTGCGTGTGTTTGTCTCTGTGTTGTTTTGGTGTGATTAATTAAAGCGAAAAAATGTCCTCATTTGCTGCACTCCGATTCGCTCCCCGGTTGCTCACCGGCAATGCCTCCCATCGGTTGGTGGCGGCGGCCACGCAGCGGAATTCCTACTTTACCTACTCGAACCAAATTTCGCAGCCGCTCGAGCGTGAGCCCAAGTACACCACGGCGGAGGAAGCCGTCAAAGTTATCAAATCAGGGGACATTGTGTTCGCGCAGGGTGCAGCGGCCACCCCGGTCCATCTGCTCGATGCGATGACCAAGCACGGCATGGAGAACAATCTGCGCGACATCACCGTGACGCACATGCACACCGAAGGGCCGGCTTCGTACTGCAAACCCGAGTGCAAGGACGTGTTCCGCTCGAAGTCACTGTTCATGGGCGGCAACGTGCGGGCAGCTGTGGCCGATGGCCGCGGTGATGCGGTCCCGATCTTCCTGCACGAAATTCCGCTGCTGTTCCGGCGCAAGCTCATCCAGCCGGATGTGGCAATCGTGTCGGTGTCGCCACCGGACAACCACGGCTACT]
consensusID : consensus_4867#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[CCGCCCACGCGTCCGGAGCCCCGAAGTTACCTGGAGCCGCAAGAACAACCCCGAGCCGTGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCAGTGATGAAGCGCATACTTTGGATAAACAACATCCCATCCCAAAACAACAAGACACGGGACGATTGGTGCTTATTCTAGTTTGGTTGGCAGTTAGAACTTCTTATTTGTAAATATGGTCCAATCTGTATGGGTGTGTGTGTGTGTGTGTGTGGTGAAACGGAACCAATTGCGCGGCAAATAAAATCTGCTGATTTTG]
[+] EMBL BM595185 [CCGCCCACGCGTCCGGAGCCCCGAAGTTACCTGGAGCCGCAAGAACAACCCCGAGCCGTGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCAGTGATGAAGCGCATACTTTGGATAAACAACATCCCATCCCAAAACAACAAGACACGGGACGATTGGTGCTTATTCTAGTTTGGTTGGCAGTTAGAACTTCTTATTTGTAAATATGGTCCAATCTGTATGGGTGTGTGTGTGTGTGTGTGTGGTGAAACGGAACCAATTGCGCGGCAAATAAAATCTGCTGATTTTG]
consensusID : consensus_4867#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CCGTTTATTTATAATTATTAATAAAAATAATTCTTATTTTTTATAGTTTTAGTAATTTATAATGAAATAATCAATTCTTAATTATAGTGTATTAGTATTTTAAAAGAATATTGAAATAATTTGAAAAATTTTTCATTTTTAAGAAAATTTAATTTATGTGTACCTTGTGTATCAGGGTTTATTAAATAATCAAATTATTATAATAATTTCCTCTCGAATTTGTACAAGATTCAATTATATATAAAAGTTATTGCGGAATAACTATCTTCAGATATGCAATTAGAAATGAAATGTTAATCGCTTTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTCCTCCCTTTAATAATTAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATCTTTTAAGGACATATCAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAA]
[+] EMBL BM606221 [CCGTTTATTTATAATTATTAATAAAAATAATTCTTATTTTTTATAGTTTTAGTAATTTATAATGAAATAATCAATTCTTAATTATAGTGTATTAGTATTTTAAAAGAATATTGAAATAATTTGAAAAATTTTTCATTTTTAAGAAAATTTAATTTATGTGTACCTTGTGTATCAGGGTTTATTAAATAATCAAATTATTATAATAATTTCCTCTCGAATTTGTACAAGATTCAATTATATATAAAAGTTATTGCGGAATAACTATCTTCAGATATGCAATTAGAAATGAAATGTTAATCGCTTTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTCCTCCCTTTAATAATTAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATCTTTTAAGGACATATCAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4867#2 ------------------------------------------------------------
consensus_4867#3 ------------------------------------------------------------
consensus_4867#0 CCCGGGTTAAAGCAGCACACTGCATCTTTTGTGTCACCTATCCCCTAAATCAACCTGTTA 60
consensus_4867#1 ------------------------------------------------------------
consensus_4867#2 -----------------CCGCCCACGCGTCCGGAGCCCCGAAGTTACCTGGAGCCGCA-A 42
consensus_4867#3 -----------------------------------CCGTTTATTTATAATTATTAATA-A 24
consensus_4867#0 AAGCCAACCGGGCGCAAGAGATAAAGGAAGGAAAAAAGGCACGCGAAAAAGATTGTGATA 120
consensus_4867#1 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGA-G 29
*
consensus_4867#2 GAACAACCCCGAGCCGTGGGAGGAA-TACCGGACCA-AGCAGCATAAGTTCTACTCTCCG 100
consensus_4867#3 AAATAATTCTTATTTTTTATAGTTT-TAGTAATTTATAATGAAATAA--TCAATTCTT-A 80
consensus_4867#0 AGAGAATTTTAAGTATGTATATTTTGTATTATAAGTGGACCGCATCA-TCCATCCCCCCG 179
consensus_4867#1 AAAATCTACAGAGCTGAGGCAGCAACTTACTGTTGGCTAGTGCGTGTGTTTGTCTCTGTG 89
* * * * * *
consensus_4867#2 GTCAGGGATTAC-TCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAG 159
consensus_4867#3 ATTATAGTGTAT-TAGTATTTTAAAAG---AATATTGAAATAATTTGAAAAATTTTTCAT 136
consensus_4867#0 GTGTGCCTGCAGATCCCATTGAAGCGGTGTGCTGNGGCAGAAGCTTTCTGGTTTCGGCGT 239
consensus_4867#1 TTGTTTTGGTGTGATTAATTAAAGCGAAAAAATGTCCTCATTTGCTGCACTCCGATTCG- 148
* * * *
consensus_4867#2 CATATTGTCAGCC-ACTGAAGAGGCGCCA----CCGGCTATAGA----ATGGGGACGGGG 210
consensus_4867#3 TTTTAAGAAAATTTAATTTATGTGTACCT----TGTGTATCAGGGTTTATTAAATAATCA 192
consensus_4867#0 CTTTTTAAACGTATATTAGTNNTGTACTTGTGATGAACCATTGTATCTATTCGGAAGCAG 299
consensus_4867#1 CTCCCCGGTTGCTCACCGGCAATGCCTCC-CATCGGTTGGTGGCGGCGGCCACGCAGCGG 207
* * *
consensus_4867#2 AATCACCACTCTA---ATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACA 267
consensus_4867#3 AATTATTATAATA---ATTTCCTCTCGAATTTGTACAAGATTCAATTATATATAAAAGTT 249
consensus_4867#0 TAACATTGTATTGC--GCGCGCACCACAGTCATTGAAAGAAGAAGCATCGGAGCACAG-G 356
consensus_4867#1 AATTCCTACTTTACCTACTCGAACCAAATTTCGCAGCCGCTCGAGCGTGAGCCCAAGTAC 267
* * * * *
consensus_4867#2 CCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAG 327
consensus_4867#3 ATTGCGGAATAACTATCTTCAGATATGCAATTAGAAATGAAATGTTAATCGCTTTAAAAT 309
consensus_4867#0 ACGGTTGNAGGTTGAGATAGCAACGCNGCTGTGAAGGAGCGAC-TNNGTTGTNGCGATAT 415
consensus_4867#1 ACCACGGCGGAGGAAGCCGTCAAAGTTATCAAATCAGGGGACATTGTGTTCGCGCAGGGT 327
* * * *
consensus_4867#2 CCGCTGGAAAAG---ACTCAAAGGATAAACGGAAT--TCGATCGACTAATTGGAACACAT 382
consensus_4867#3 ATATC--TAGTT---TTTTAAGAAATGAATTTAAT--TTAGCTTATTTATTTTATTAAGT 362
consensus_4867#0 GTGTTGTAAGGC---GTACGNAAGTANAATGTTAT--CCCAACCCCGTATTACCGTCTAT 470
consensus_4867#1 GCAGCGGCCACCCCGGTCCATCTGCTCGATGCGATGACCAAGCACGGCATGGAGAACAAT 387
* ** ** *
consensus_4867#2 TTAGCACGCAGTGATGAAGCGCATACTTTGGATAAAC-AACATCCCA-TCCCA-AAACAA 439
consensus_4867#3 TAATTTCCTCCCTTTA------ATAATTAAATAAAGT-AATATTTTA-AGGGATGAGCTT 414
consensus_4867#0 -AAGGACCCAACCCTACAGGACAAAACCGAACCAGATGAACAGACGC-TCTCCCTAGCGT 528
consensus_4867#1 CTGCGCGACATCACCGTGACGCACATGCACACCGAAGGGCCGGCTTCGTACTGCAAACCC 447
* * * *
consensus_4867#2 CAAGACACGGGACGATTGGTGCTTATTCTAGTTTGGTTGGC-AGTTAG-AACTTCTTATT 497
consensus_4867#3 TAAAATA----AAATTTTATATTTTTTATAATCTTTTAAGG-ACATATCAGCTTAAAAAT 469
consensus_4867#0 AAGCCTC----GCGGCTCGTCTACCCCGTACAGNTTGTACA-ANAAAGCGGCTACTTNAC 583
consensus_4867#1 GAGTGCA----AGGACGTGTTCCGCTCGAAGTCACTGTTCATGGGCGGCAACGTGCGGGC 503
* * * *
consensus_4867#2 TGTAAATATGGTCCAATCTGT-ATGGGTGTGTGTGTGTGTGTGTGTGGTGAAACGGAACC 556
consensus_4867#3 AGCTATTATTAATAAATTTGTTATAA---------------------------------- 495
consensus_4867#0 CCTATATCGTAGTCGATGTGC-AAGGGAAGAAGGCCCTCTTCATAATTGGAACCAAACCC 642
consensus_4867#1 AGCTGTGGCCGATGGCCGCGGTGATGCGGTCCCGATCTTCCTGCACGAAATTCCGCTGCT 563
*
consensus_4867#2 AATTGCGCGGCAAATAAAATCTGCTGATTTTG---------------------------- 588
consensus_4867#3 ------------------------------------------------------------
consensus_4867#0 GGCNTCGCAATACCAANTGNCCCGCCCCACGGAACACAGNGGGAAGCCACTTCACGAACC 702
consensus_4867#1 GTTCCGGCGCAAGCTCATCCAGCCGGATGTGGCAATCGTGTCGGTGTCGCCAC-CGGACA 622
consensus_4867#2 ------------------------------------------------------------
consensus_4867#3 ------------------------------------------------------------
consensus_4867#0 CCCCCGACCACCCGCGCCGCCGGAATTTCCGACGCTNACTNAACGCGGNAAATTGNACAA 762
consensus_4867#1 ACCACGGCTACT------------------------------------------------ 634
consensus_4867#2 -------------------------------------------------------
consensus_4867#3 -------------------------------------------------------
consensus_4867#0 CATACCCCTTGACATACACCGGAATACCGGGCCCCTCGCGCACACTGCGCANACC 817
consensus_4867#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||