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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence
[TGATTTATTTTCACGAAACATTTTATATGTTGTTTACAACACGTCGCCATCCTGATCCCCACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCCACAGTCAATGTGATGCCAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCGGTTCTTGCGTCGATGTTCTTCGAAAAAGTCCCCTTCCGGGACAGGCATGTCGTTCATGGTGTACTCCGCATCCTTACTACAGGCAAACGAATCTGCTGAAGCAGCAGGAAGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGTGTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCGGTACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACTTCTACGGCGAGCGCACCACGATCGATGTGAACGATCTGTACGAAATTCACAATCAAACGCAGGTGTACCTGGTCGGTACGGAATCGCGCCACAAGGTGGGACATTTGCTAACCGCAAAGGAAGTCACGCTGGGCCCGTGGGACTCCATCTTGCTTGGGCCGGTGTCGAGTGGTGGACGGGCTGTGCTAGCGTTCGGATTGCTCGTCCTTGCCGTGGTGAAATCGTTCCTTTTCTAGGCGCTGATGTAGATGTCGGCTTTGTCGTCGCTTCTAACGAGCATAATAAATATCC]
[+] EMBL BX610369 [TGATTTATTTTCACGAAACATTTTATATGTTGTTTACAACACGTCGCCATCCTGATCCCCACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCCACAGTCAATGTGATGCCAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCGGTTCTTGCGTCGATGTTCTTCGAAAAAGTCCCCTTCCGGGACAGGCATGTCGTTCATGGTGTACTCCGCATCCTTACTACAGGCAAACGAATCTGCTGAAGCAGCAGGAAGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGTGTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCGGTACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACTTCTACGGCGAGCGCACCACGATCGATGTGAACGATCTGTACGAAATTCACAATCAAACGCAGGTGTACCTGGTCGGTACGGAATCGCGCCACAAGGTGGGACATTTGCTAACCGCAAAGGAAGTCACGCTGGGCCCGTGGGACTCCATCTTGCTTGGG ]
[+] EMBL BX609130 [ TCCTGATCCCCACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCCACAGTCAATGTGATGCCAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCGGTTCTTGCGTCGATGTTCTTCGAAGAAGTCCCCTTCCGGGACAGGCATGTCGTTCATGGTGTACTCCGCATCCTTACTACAGGCAAACGAATCTGCTGAAGCAGCAGGAAGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGTGTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCGGTACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACTTCTACGGCGAGCGCACCACGATCGATGTGAACGATCTGTACGAAATTCACAATCAAACGCAGGTGTACCTGGTCGGTACGGAATCGCGCCACAAGGTGGGACATTTGCTAACCGCAAAGGAAGTCACGCTGGGCCCGTGGGACTCCATCGTGCTTGGGCCGGTGTCGAGTGGTGGACGGGCTGTGCTAGCGTTCGGATTGCTCGTCCTTGCCGTGGTGAAATCGTTCCTTTTCTAGGCGCTGATGTAGATGTCGGCTTTGTCGTCGCTTCTAACGAGCATAATAAATATCC]
consensusID : consensus_4869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[AGCTGGGCTCTGTGTATTTATTTATTATTGACAAAACGACCACGACTAAGCCCCTTCCGGTCCCCCGCCAAGGGGTTGGGGGTTTTGGGGGCGTCAGAGGCTACCGCACACGTACCGCACACACACACGCCGCTCCTCATCTCACACATCGACGACGACCGGGGCATTCCGCTTTTAGTGCATATCGTACACCGATTTCAGTGCCAGCTCGGGCTGATCGTAGCCCAGCTCTTCCGGCGTGTCGATGCCGAGCTCGGTCAGCGTCGGGCGAATTTCCTGCAGCAGAAACGGGTAGATTTCGTTCGTCTTGTCACCGCACTTGTCCTTCACGCCCTCCAGGAAGCGGACGGCCAGCGCGTAGTCGTTCAGGCGGCGGCAAGCCTTCAGCGCGGACACGATGATTTTCGGCTCCGGCACCAGATCCATGCCGAGCAGATCGTTCATCGCCTCGCGGGCCTCCCAGCCATCGATCTCCGGCCGGTTGAAGTACGCCTCGTAGCGTTTGTCGAACTCCTCGTCCGTCTCATTACTGTGCGAGTCGCGCACCACCATCGCACCCACCATCGGTTGGCTGCTCTTCAGCCCAGCGGCGCTGCGAAGTCCGCCCAGCACACGGCCAGCCGCAAAACGGAGCATCTTCGATATTTATTCACCGGAACGACGGAGGAAAAACTTGCACCCGATAGTGTGAGTCTTAAGTAATCGAAAGCCCAGTAGGCCAACAG]
[+] EMBL CNS08YE3 [AGCTGGGCTCTGTGTATTTATTTATTATTGACAAAACGACCACGACTAAGCCCCTTCCGGTCCCCCGCCAAGGGGTTGGGGGTTTTGGGGGCGTCAGAGGCTACCGCACACGTACCGCACACACACACGCCGCTCCTCATCTCACACATCGACGACGACCGGGGCATTCCGCTTTTAGTGCATATCGTACACCGATTTCAGTGCCAGCTCGGGCTGATCGTAGCCCAGCTCTTCCGGCGTGTCGATGCCGAGCTCGGTCAGCGTCGGGCGAATTTCCTGCAGCAGAAACGGGTAGATTTCGTTCGTCTTGTCACCGCACTTGTCCTTCACGCCCTCCAGGAAGCGGACGGCCAGCGCGTAGTCGTTCAGGCGGCGGCAAGCCTTCAGCGCGGACACGATGATTTTCGGCTCCGGCACCAGATCCATGCCGAGCAGATCGTTCATCGCCTCGCGGGCCTCCCAGCCATCGATCTCCGGCCGGTTGAAGTACGCCTCGTAGCGTTTGTCGAACTCCTCGTCCGTCTCATTACTGTGCGAGTCGCGCACCACCATCGCACCCACCATCGGTTGGCTGCTCTTCAGCCCAGCGGCGCTGCGAAGTCCGCCCAGCACACGGCCAGCCGCAAAACGGAGCATCTTCGATATTTATTCACCGGAACGACGGAGGAAAAACTTGCACCCGATAGTGTGAGTCTTAAGTAATCGAAAGCCCAGTAGGCCAACAG]
consensusID : consensus_4869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[CAGATCCCCTGAGGTTTTTATGGTTTGAACTGCGTATTGTTTTAAGTGAGGGCGCCTTGTGTTGCTTGTGTGATGTGTGTGTGATATGTAATGATTCGCGAGACAGCATAAAGTGTTTTGTTTGTAAGAAAGGTGTTGTGTTGAAGTGAAAATTAATGCAGNTCGTGTTCCGGTGTGGGTGAAACAATTAATAAAAATCAATGATCTATTTACCAATGGGAAAATGTTTTGCNCGAGATCATTCGTTGTTATACCCGCAACGTAGGAACATAACTGACAAGCGGTAGGCAAAAAGCGTGCGTTTNGCGAAGTGCGAACATACCCTAAAACCAGAGGTCACTATATGTNTNATACCCGTTTCCAAATCANAGTATTTGAGACGAGNNTAAACCACTGNCGCTTGNCGAACAGGCCATGAGCACANATATATTGGAGATGAGCGGGGCTATACGCGTTTTCCCACNTTATGCGTAACCACTAAGCANATCATATTGTATGTTGCAGCAACTATTACAGCCGACTAATGTTCTAATGCAGACATATTAACTNNACTTTAACTCAGTTCATCAACAGANCCGGGTCTTA]
[+] EMBL AL930061 [CAGATCCCCTGAGGTTTTTATGGTTTGAACTGCGTATTGTTTTAAGTGAGGGCGCCTTGTGTTGCTTGTGTGATGTGTGTGTGATATGTAATGATTCGCGAGACAGCATAAAGTGTTTTGTTTGTAAGAAAGGTGTTGTGTTGAAGTGAAAATTAATGCAGNTCGTGTTCCGGTGTGGGTGAAACAATTAATAAAAATCAATGATCTATTTACCAATGGGAAAATGTTTTGCNCGAGATCATTCGTTGTTATACCCGCAACGTAGGAACATAACTGACAAGCGGTAGGCAAAAAGCGTGCGTTTNGCGAAGTGCGAACATACCCTAAAACCAGAGGTCACTATATGTNTNATACCCGTTTCCAAATCANAGTATTTGAGACGAGNNTAAACCACTGNCGCTTGNCGAACAGGCCATGAGCACANATATATTGGAGATGAGCGGGGCTATACGCGTTTTCCCACNTTATGCGTAACCACTAAGCANATCATATTGTATGTTGCAGCAACTATTACAGCCGACTAATGTTCTAATGCAGACATATTAACTNNACTTTAACTCAGTTCATCAACAGANCCGGGTCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4869#0 TGATTTATTTTCACGAAACATTTTATATGTTGTTTACAACACGTCGCCATCCTGATCCCC 60
consensus_4869#2 -------------------------------------------CAGATCCCCTGAGGTTT 17
consensus_4869#1 -------------------------------------------------AGCTGGGCTCT 11
***
consensus_4869#0 ACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCC 120
consensus_4869#2 TTATGGTTTGAACT-----GCGTATTGTT-TTAAGTGAGGGCGCCTTGTGTTGCTTGTGT 71
consensus_4869#1 GTGTATTTATTTATTATTGACAAAACGAC--CACGACTAAGCCCCTTCCGGTCCCCCGCC 69
* * * * * * * * * *
consensus_4869#0 ACAGTCAATGTGATGC-CAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCG 179
consensus_4869#2 GATGTGTGTGTGATATGTAATGATTCGCGAGACAGCATAAAGTGTTTTGTTTGTAAGAAA 131
consensus_4869#1 AAGGGGTTGGGGGTTT-TGGGGGCGTCAGAGGCTACCGCACACGTACCGCACACACACAC 128
* * * * * * *
consensus_4869#0 GTTCTTGCGTCGATGTTC---TTCGAAAAAGTCC---CCTTCCGGGACAGGCATGTCGTT 233
consensus_4869#2 GGTGTTGTGTTGAAGTGAAAATTAATGCAGNTCG---TGTTCCGGTGTGGGTGAAACAAT 188
consensus_4869#1 GCCGCTCC-TCATCTCACACATCGACGACGACCGGGGCATTCCGCTTTTAGTGCATATCG 187
* * * * * ***** *
consensus_4869#0 CATGGTGTACTCCGCATCC--TTA--CTACAGGCAAACG-AATCTGCTGAAGCAGCAGGA 288
consensus_4869#2 TAATAAAAATCAATGATCTATTTA--CCAATGGGAAAAT-GTTTTGCNCGAG-ATCATTC 244
consensus_4869#1 TACACCGATTTCAGTGCCAGCTCGGGCTGATCGTAGCCCAGCTCTTCCGGCGTGTCGAT- 246
* * * * * * * * * * *
consensus_4869#0 AGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGT 348
consensus_4869#2 GTTGTTATACCCGCAACGTAGG----AACATAACTGACAAGCGGTAGGCAAAAAGCGTGC 300
consensus_4869#1 -GCCGAGCTCGGTCAGCGTCGGG-CGAATTTCCTGCAGCAGAAACGGGTAGATTTCGTTC 304
* ** * * ** * * **
consensus_4869#0 GTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCG 408
consensus_4869#2 GTTTN-GCGAAGTG---------CGAACATACCCTAAAACCAGAGGTCACTATATGTNTN 350
consensus_4869#1 GTCTTGTCACCGCACTTGTCCTTCACGCCCTCCAGGAAGCGGACGGCCAGCGCGTAGTCG 364
** * * * * * *
consensus_4869#0 GT-ACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACT 467
consensus_4869#2 AT-ACCCGTTTCCAAATCANAGTATTTGAGACGAGNNTAAACCACTGNCGCTTGNCGAAC 409
consensus_4869#1 TTCAGGCGGCGGCAAGCCTTCAGCGCGGACACGATGATTTTCGGCTCCGGC--ACCAGAT 422
* * * * **** * * ** *
consensus_4869#0 TCTACGGCGAGCGCAC-CACGATCGAT--GTGAACGAT-CTGTACGAAATTCACAATCAA 523
consensus_4869#2 AG-GCCATGAGCACANATATATTGGAG--ATGAGCGGGGCTATACGCGTTTTCCCACNTT 466
consensus_4869#1 CC-ATGCCGAGCAGATCGTTCATCGCCTCGCGGGCCTCCCAGCCATCGATCTCCGGCCGG 481
**** * * * * * * * *
consensus_4869#0 ACGCAGGTGTACCTGGTCG-GTACGG-AATCGCGCCACAAGGTGGGACATT-TGCTAACC 580
consensus_4869#2 ATGC----GTAACCACTAA-GCAN----ATCATATTGTATGTTGCAGCAAC-TATTACAG 516
consensus_4869#1 TTGAAG-TACGCCTCGTAGCGTTTGTCGAACTCCTCGTCCGTCTCATTACTGTGCGAGTC 540
* * * * * * * * * *
consensus_4869#0 GCA-AAGGAAGTCACGCTGGGCCCGTGG-GACTCCATCTTGCTTGGGCCGGTGTCGAGTG 638
consensus_4869#2 CCG-ACTAATGTTCTAATGCAGACATATTAACTNNACTTTAACTCAGTT--CATCAACAG 573
consensus_4869#1 GCGCACCACCATCGCACCCACCATCGGTTGGCTGCTCTTCAGCCCAGCGG-CGCTGCGAA 599
* * * ** * *
consensus_4869#0 GTGGACGGGCTGTGCTAGCGTTCGGATTGCTCGTCCTTGCCGTGGTGAAATCGTTCCTTT 698
consensus_4869#2 AN--CCGGGTCTTA---------------------------------------------- 585
consensus_4869#1 GTCCGCCCAGCACACGGCCAGCCGCAAAACGGAGCATCTTCGATATTTATTCACCGGAAC 659
*
consensus_4869#0 TCTAGGCGCTGATGTAGATGTCGGCTTTGTCGTCGCTTCTAACGAGCATAATAAATATCC 758
consensus_4869#2 ------------------------------------------------------------
consensus_4869#1 GACGGAGGAAAAACTTGCACCCGATAGTGTGAGTCTTAAGTAATCGAAAGCCCAGTAGGC 719
consensus_4869#0 ------
consensus_4869#2 ------
consensus_4869#1 CAACAG 725
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||